View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12125_low_9 (Length: 534)

Name: NF12125_low_9
Description: NF12125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12125_low_9
NF12125_low_9
[»] chr1 (1 HSPs)
chr1 (17-517)||(14869582-14870082)
[»] chr8 (1 HSPs)
chr8 (20-517)||(16908577-16909080)
[»] chr7 (11 HSPs)
chr7 (153-292)||(14710257-14710396)
chr7 (231-299)||(26260382-26260450)
chr7 (331-393)||(14710156-14710218)
chr7 (237-299)||(26227488-26227550)
chr7 (241-294)||(26204405-26204458)
chr7 (241-294)||(26224043-26224096)
chr7 (231-299)||(26207921-26207989)
chr7 (335-403)||(26186866-26186933)
chr7 (335-403)||(26204502-26204570)
chr7 (335-403)||(26224139-26224207)
chr7 (335-403)||(26278313-26278381)
[»] chr5 (5 HSPs)
chr5 (173-292)||(17572660-17572779)
chr5 (178-473)||(5994868-5995166)
chr5 (173-292)||(17619933-17620052)
chr5 (331-393)||(17620097-17620159)
chr5 (331-387)||(17572565-17572621)
[»] chr6 (3 HSPs)
chr6 (156-262)||(12613434-12613540)
chr6 (331-393)||(12613609-12613671)
chr6 (20-108)||(12613301-12613389)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 14869582 - 14870082
Alignment:
Q  17 acatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataaagcgggta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869582 acatatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataaagcgggta 14869681  T
Q  117 gagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869682 gagggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaa 14869781  T
Q  217 caagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaattgaagatgttgaagat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14869782 caagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaattgaagatgttgaagat 14869881  T
Q  317 ggtgannnnnnnacggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtg 416  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||    
T  14869882 ggtgatttttttacggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacaactgctgatactagagcatgctg 14869981  T
Q  417 cagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtt 516  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||||    
T  14869982 cagttggagcagtggtgactcactgtggctggaacactattatggaaagtgtaaatgcaggtttgtcattggcaacttggccattgtttgctgaacagtt 14870081  T
Q  517 t 517  Q
    |    
T  14870082 t 14870082  T

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Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 16909080 - 16908577
Alignment:
Q  20 tatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataaagcgggtagag 119  Q
    ||||||||  ||||||||| ||| |||||||  |||||||||||  |||||||||||||| | ||| ||||| |||||||||| |||||||| |||||||    
T  16909080 tatgaggactattacaagatagccatgggaagtaagagttggagtgtgggaccagtttctttgtggatgaacaaagatgattcagataaagctggtagag 16908981  T
Q  120 ggcatggtaaagaagaagatgaagatgaaggagtgcttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaacaa 219  Q
    | ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  16908980 gacatggtaaagaagaagatgaagaagaaggggtgcttaagtggcttgattcaaagaaatatgattctgttctttatgttagttttgggagcatgaacaa 16908881  T
Q  220 gttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaattgaagatgttgaagatggt 319  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||  ||||| |||    
T  16908880 gttccctactcctcaacttgttgaaatagctcatgcacttgaagattctggccatgatttcatttgggttgttaggaaaatcgaagatgccgaagacggt 16908781  T
Q  320 ga------nnnnnnnacggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatg 413  Q
    ||             |  |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16908780 gatgatggttttttgagtgagtttgagaagagaatgaaagaaagaaacaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatg 16908681  T
Q  414 gtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaaca 513  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16908680 gtgcagttggagctgttgtgactcattgtgggtggaacactattatggaaagtgtaaatgcaggtttaccattggctacttggccattgtttgctgaaca 16908581  T
Q  514 gttt 517  Q
    ||||    
T  16908580 gttt 16908577  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 292
Target Start/End: Complemental strand, 14710396 - 14710257
Alignment:
Q  153 tgcttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctca 252  Q
    ||||||| |||||| | |||||||||||  |||||||||||||| | |||||||| ||| | ||||||||||| ||  |||| ||  |||||||||||||    
T  14710396 tgcttaaatggcttaactctaagaaagagaattctgttctctatctaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctca 14710297  T
Q  253 tgcacttgaacattctggccatgatttcatttgggttgtt 292  Q
    ||||||||||  |||  |||||||||||||||||||||||    
T  14710296 tgcacttgaagcttcaagccatgatttcatttgggttgtt 14710257  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 26260382 - 26260450
Alignment:
Q  231 ctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaa 299  Q
    ||||| |||||||||||||||||| ||||||| |||| || ||| ||||||||||||||||||||||||    
T  26260382 ctcaggttgttgaaatagctcatggacttgaaaattcaggtcataatttcatttgggttgttaggaaaa 26260450  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 14710218 - 14710156
Alignment:
Q  331 ggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccaca 393  Q
    ||||||||| |||||| |||| |||||||| || || ||||||||||||||||||||||||||    
T  14710218 ggagtttgaaaagagagtgaaagaaagcaataagggttatttgatatggggttgggcaccaca 14710156  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 26227488 - 26227550
Alignment:
Q  237 ttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaa 299  Q
    |||| |||||||||||||  |||||| |||| || ||| ||||||||||||||||||||||||    
T  26227488 ttgtagaaatagctcatggtcttgaaaattcaggtcataatttcatttgggttgttaggaaaa 26227550  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 26204405 - 26204458
Alignment:
Q  241 tgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttag 294  Q
    ||||||||||||||  |||||| ||||||| ||| |||||||||||||||||||    
T  26204405 tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttag 26204458  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 26224043 - 26224096
Alignment:
Q  241 tgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttag 294  Q
    ||||||||||||||  |||||| ||||||| ||| |||||||||||||||||||    
T  26224043 tgaaatagctcatggtcttgaaaattctggtcataatttcatttgggttgttag 26224096  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 26207921 - 26207989
Alignment:
Q  231 ctcagcttgttgaaatagctcatgcacttgaacattctggccatgatttcatttgggttgttaggaaaa 299  Q
    ||||| |||| |||||||||||||  || ||| |||| || ||| ||||||||||||||||||||||||    
T  26207921 ctcagattgtagaaatagctcatggtctggaaaattccggtcataatttcatttgggttgttaggaaaa 26207989  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 26186866 - 26186933
Alignment:
Q  335 tttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacagcttctgata 403  Q
    |||||||| |||||||| |||||||| || || ||| | ||||||  ||||||||||||||||||||||    
T  26186866 tttgagaa-agaatgaaagaaagcaaaaagggatatatcatatggaattgggcaccacagcttctgata 26186933  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 26204502 - 26204570
Alignment:
Q  335 tttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacagcttctgata 403  Q
    |||||||| || ||||| |||||||| || |||||| | ||||||  |||||| |||||||||||||||    
T  26204502 tttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgata 26204570  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 26224139 - 26224207
Alignment:
Q  335 tttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacagcttctgata 403  Q
    |||||||| || ||||| |||||||| || |||||| | ||||||  |||||| |||||||||||||||    
T  26224139 tttgagaaaaggatgaaagaaagcaaaaagggctatatcatatggaattgggccccacagcttctgata 26224207  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 26278313 - 26278381
Alignment:
Q  335 tttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccacagcttctgata 403  Q
    |||||||| || ||||| ||||||||||| |||||  | ||||||| |||||||||||| || ||||||    
T  26278313 tttgagaaaaggatgaaagaaagcaacaagggctacatcatatgggattgggcaccacaactgctgata 26278381  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 17572779 - 17572660
Alignment:
Q  173 aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggcc 272  Q
    ||||||||  |||||||||||||||| |||||||| ||| | ||||||||||| ||  |||| ||  |||||||||||||||||||||||  |||  |||    
T  17572779 aagaaagagaattctgttctctatgtaagttttggcagcttaaacaagttcccaacatctcaactcattgaaatagctcatgcacttgaaacttcaagcc 17572680  T
Q  273 atgatttcatttgggttgtt 292  Q
    ||||||||||||||||||||    
T  17572679 atgatttcatttgggttgtt 17572660  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 473
Target Start/End: Complemental strand, 5995166 - 5994868
Alignment:
Q  178 agatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggccatgat 277  Q
    ||||| ||||||| | ||||| |||||||| || ||||| || || |||  | ||||| | |||||||| || |||||||||||| |||| || ||| ||    
T  5995166 agatggttctgttttatatgtaagttttggcagtatgaataaatttccttattctcagttagttgaaattgcacatgcacttgaaaattcaggtcataat 5995067  T
Q  278 ttcatttgggttgttaggaaaattgaagatgttgaaga---tggtgannnnnnnacggagtttgagaagagaatgaaggaaagcaacaaaggctatttga 374  Q
    ||||||||||||||||| |||| ||||||   ||||||   |||||           ||||||||||||| |||||| |||||    |||||||||||||    
T  5995066 ttcatttgggttgttagaaaaaatgaagaaaatgaagaaggtggtgtttttcttgaagagtttgagaagaaaatgaaagaaagtggaaaaggctatttga 5994967  T
Q  375 tatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatggaaagtgtaaatg 473  Q
    | ||||| ||||||||||||||| ||||||| ||| ||  |||| ||||||   | |||| ||||||||| ||||||||| || | |||||||| ||||    
T  5994966 tttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttgaaagtgtgaatg 5994868  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 17619933 - 17620052
Alignment:
Q  173 aagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgcacttgaacattctggcc 272  Q
    ||||||||  |||||||| ||||||| |||||||| ||| | |||||||||||  |  |||| ||  |||||||||||||||||||||||  |||  |||    
T  17619933 aagaaagagaattctgttatctatgtaagttttggcagcttaaacaagttcccaccatctcaactcattgaaatagctcatgcacttgaagcttcaagcc 17620032  T
Q  273 atgatttcatttgggttgtt 292  Q
    || |||||||||||||||||    
T  17620033 ataatttcatttgggttgtt 17620052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 17620097 - 17620159
Alignment:
Q  331 ggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccaca 393  Q
    |||||||||||| |||||||| |||| |||||| || |||||||||||||||||||| |||||    
T  17620097 ggagtttgagaaaagaatgaaagaaaacaacaagggttatttgatatggggttgggccccaca 17620159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 17572621 - 17572565
Alignment:
Q  331 ggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggc 387  Q
    ||||||||| |||||| |||| |||||||| || || ||||||||||||||||||||    
T  17572621 ggagtttgaaaagagagtgaaagaaagcaataagggttatttgatatggggttgggc 17572565  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 12613434 - 12613540
Alignment:
Q  156 ttaagtggcttgattctaagaaagatgattctgttctctatgttagttttgggagcatgaacaagttccctactcctcagcttgttgaaatagctcatgc 255  Q
    |||| |||||| |||| ||||||||  |||||||||||||||| |||||||| |||||||||||||||||  |  |||| ||  ||||||||||||||||    
T  12613434 ttaaatggcttaattccaagaaagagaattctgttctctatgtaagttttggtagcatgaacaagttcccatcatctcaactcattgaaatagctcatgc 12613533  T
Q  256 acttgaa 262  Q
    |||||||    
T  12613534 acttgaa 12613540  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 12613609 - 12613671
Alignment:
Q  331 ggagtttgagaagagaatgaaggaaagcaacaaaggctatttgatatggggttgggcaccaca 393  Q
    |||||||||||| ||| |||| |||||||| || || ||||||||||||||||||||||||||    
T  12613609 ggagtttgagaaaagagtgaaagaaagcaataagggttatttgatatggggttgggcaccaca 12613671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 12613301 - 12613389
Alignment:
Q  20 tatgaggagcattacaagacagcaatgggaaccaagagttggagcctgggaccagtttctctatgggtgaaccaagatgattcggataa 108  Q
    |||||||||||||||||||  ||| | ||||| ||| |||||||| | |||||||||||  ||||||  |||||||||| ||| |||||    
T  12613301 tatgaggagcattacaagaatgcatttggaacaaagtgttggagcttaggaccagtttcattatgggcaaaccaagatgtttctgataa 12613389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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