View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12126_high_3 (Length: 269)

Name: NF12126_high_3
Description: NF12126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12126_high_3
NF12126_high_3
[»] chr3 (23 HSPs)
chr3 (25-252)||(40228157-40228383)
chr3 (102-229)||(48436345-48436479)
chr3 (88-230)||(18355875-18356027)
chr3 (145-232)||(43750252-43750341)
chr3 (145-232)||(48963236-48963324)
chr3 (145-230)||(3383193-3383281)
chr3 (145-228)||(53559683-53559768)
chr3 (88-230)||(23087938-23088091)
chr3 (145-224)||(13703338-13703417)
chr3 (145-230)||(13364960-13365048)
chr3 (145-230)||(46694182-46694270)
chr3 (145-229)||(36881398-36881485)
chr3 (153-232)||(44522585-44522664)
chr3 (145-229)||(52009122-52009208)
chr3 (145-230)||(198972-199060)
chr3 (145-230)||(19241740-19241828)
chr3 (149-228)||(46188886-46188967)
chr3 (145-227)||(54086673-54086757)
chr3 (145-230)||(52805099-52805186)
chr3 (145-232)||(1455223-1455310)
chr3 (153-228)||(19897010-19897085)
chr3 (145-232)||(37781052-37781141)
chr3 (145-232)||(29375253-29375337)
[»] chr8 (25 HSPs)
chr8 (108-230)||(39151522-39151644)
chr8 (100-213)||(27563887-27564007)
chr8 (145-229)||(26628888-26628974)
chr8 (100-229)||(20546313-20546448)
chr8 (145-232)||(27035111-27035200)
chr8 (145-230)||(13881027-13881114)
chr8 (100-232)||(30906709-30906850)
chr8 (145-230)||(30999596-30999683)
chr8 (145-230)||(3585568-3585656)
chr8 (145-230)||(7147030-7147118)
chr8 (145-230)||(11174295-11174383)
chr8 (145-230)||(11646397-11646485)
chr8 (145-230)||(37345688-37345776)
chr8 (145-230)||(40058375-40058463)
chr8 (145-230)||(40918803-40918891)
chr8 (145-206)||(36068224-36068285)
chr8 (145-230)||(2540002-2540091)
chr8 (145-230)||(28568036-28568123)
chr8 (145-230)||(28575629-28575716)
chr8 (145-230)||(35866731-35866818)
chr8 (145-230)||(43275471-43275559)
chr8 (145-230)||(28562539-28562626)
chr8 (145-226)||(45400842-45400927)
chr8 (149-229)||(28326734-28326816)
chr8 (108-150)||(10180896-10180938)
[»] chr7 (11 HSPs)
chr7 (102-220)||(27941006-27941131)
chr7 (145-232)||(3091632-3091718)
chr7 (143-232)||(3498825-3498916)
chr7 (100-232)||(16662209-16662350)
chr7 (100-232)||(17636569-17636710)
chr7 (145-230)||(10981625-10981713)
chr7 (145-230)||(25614425-25614513)
chr7 (145-230)||(36453196-36453284)
chr7 (145-230)||(27813928-27814016)
chr7 (145-206)||(47110594-47110655)
chr7 (145-208)||(8380080-8380143)
[»] chr2 (15 HSPs)
chr2 (103-232)||(39561918-39562049)
chr2 (145-230)||(22388210-22388295)
chr2 (145-232)||(1102618-1102706)
chr2 (109-229)||(4917880-4918009)
chr2 (145-229)||(28110167-28110250)
chr2 (145-229)||(3519026-3519112)
chr2 (145-208)||(37673815-37673878)
chr2 (147-230)||(1002805-1002890)
chr2 (145-232)||(12969812-12969901)
chr2 (145-230)||(23366906-23366994)
chr2 (149-230)||(39938287-39938371)
chr2 (145-229)||(37284590-37284672)
chr2 (149-229)||(24777785-24777867)
chr2 (145-230)||(1646404-1646492)
chr2 (175-229)||(32840275-32840331)
[»] chr5 (19 HSPs)
chr5 (149-230)||(11319676-11319757)
chr5 (145-228)||(1056695-1056778)
chr5 (145-232)||(7277495-7277584)
chr5 (145-232)||(25683301-25683390)
chr5 (145-228)||(23097796-23097880)
chr5 (145-230)||(12806925-12807013)
chr5 (145-232)||(16054227-16054316)
chr5 (149-231)||(21638888-21638970)
chr5 (145-232)||(37900695-37900786)
chr5 (147-230)||(39071000-39071085)
chr5 (145-230)||(40886682-40886770)
chr5 (145-230)||(734411-734498)
chr5 (145-232)||(36561171-36561261)
chr5 (145-230)||(10285130-10285217)
chr5 (145-230)||(25773766-25773854)
chr5 (185-230)||(1056397-1056442)
chr5 (145-226)||(11795355-11795436)
chr5 (145-229)||(11797663-11797751)
chr5 (145-226)||(30720564-30720648)
[»] chr4 (22 HSPs)
chr4 (145-229)||(18507338-18507423)
chr4 (145-242)||(19692827-19692927)
chr4 (145-242)||(19703412-19703512)
chr4 (145-229)||(50767982-50768067)
chr4 (145-232)||(40122559-40122647)
chr4 (145-229)||(21064878-21064966)
chr4 (81-230)||(6128949-6129108)
chr4 (145-232)||(20249086-20249175)
chr4 (145-230)||(21310542-21310626)
chr4 (145-230)||(22321340-22321427)
chr4 (145-230)||(24706319-24706407)
chr4 (145-230)||(44568954-44569042)
chr4 (145-229)||(14261162-14261249)
chr4 (150-232)||(20714426-20714510)
chr4 (145-230)||(12071678-12071765)
chr4 (145-232)||(21661607-21661697)
chr4 (145-232)||(21670371-21670461)
chr4 (149-232)||(31892349-31892433)
chr4 (145-230)||(25704768-25704856)
chr4 (145-230)||(34324655-34324742)
chr4 (100-150)||(50839051-50839101)
chr4 (149-230)||(32543597-32543680)
[»] chr1 (23 HSPs)
chr1 (88-232)||(23526355-23526509)
chr1 (102-230)||(27143036-27143171)
chr1 (145-232)||(18396810-18396899)
chr1 (103-206)||(40261308-40261418)
chr1 (80-232)||(24876677-24876839)
chr1 (145-222)||(3657200-3657279)
chr1 (100-232)||(31003807-31003948)
chr1 (145-230)||(321743-321831)
chr1 (145-230)||(23045351-23045439)
chr1 (145-232)||(33082860-33082949)
chr1 (145-230)||(40783729-40783817)
chr1 (145-232)||(46771752-46771843)
chr1 (145-230)||(47037924-47038012)
chr1 (145-232)||(31061531-31061616)
chr1 (145-230)||(284450-284538)
chr1 (190-232)||(52037242-52037284)
chr1 (145-229)||(52478084-52478170)
chr1 (145-224)||(23166923-23167004)
chr1 (145-232)||(24771978-24772067)
chr1 (145-228)||(51064826-51064911)
chr1 (145-231)||(1837900-1837990)
chr1 (145-198)||(27211027-27211080)
chr1 (145-213)||(40052536-40052604)
[»] scaffold0168 (1 HSPs)
scaffold0168 (100-228)||(7788-7925)
[»] scaffold0076 (1 HSPs)
scaffold0076 (145-232)||(15395-15482)
[»] scaffold0343 (1 HSPs)
scaffold0343 (145-227)||(6972-7056)
[»] chr6 (15 HSPs)
chr6 (145-232)||(17942560-17942648)
chr6 (145-230)||(31559810-31559896)
chr6 (145-230)||(8626599-8626687)
chr6 (145-230)||(29260309-29260397)
chr6 (145-227)||(13757328-13757412)
chr6 (145-230)||(1605696-1605783)
chr6 (145-230)||(8235741-8235830)
chr6 (145-232)||(15064767-15064856)
chr6 (145-232)||(4129542-4129631)
chr6 (147-228)||(14287107-14287190)
chr6 (149-232)||(20398314-20398401)
chr6 (145-230)||(30734555-30734643)
chr6 (146-206)||(847849-847909)
chr6 (103-147)||(1814803-1814847)
chr6 (202-230)||(30235439-30235467)
[»] scaffold0060 (1 HSPs)
scaffold0060 (150-230)||(10862-10942)
[»] scaffold0062 (1 HSPs)
scaffold0062 (149-230)||(343-425)
[»] scaffold0056 (1 HSPs)
scaffold0056 (100-200)||(71233-71340)
[»] scaffold0025 (1 HSPs)
scaffold0025 (145-232)||(65237-65325)
[»] scaffold1770 (1 HSPs)
scaffold1770 (145-232)||(277-366)
[»] scaffold0054 (1 HSPs)
scaffold0054 (145-232)||(45569-45658)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 40228157 - 40228383
Alignment:
Q  25 gagaatgagaaatatgattctctttttgtgtcctctttgacctctcgtctaaatgttactttttccgtttca-aacacttgtcgcttttgaagaacaatt 123  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||||| |||||||| ||||||||||||| || | |||||  |||||||||||||||    
T  40228157 gagaatgagaaatatgattctttttttgt--cctctttgacctctcgtccaaatgttattttttccgtttcacaatatttgtcatttttgaagaacaatt 40228254  T
Q  124 ttatttcacatcacttgtcactttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaata 223  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| || ||||||    
T  40228255 ttatttcacatcacttgtcacttttaatgcaacattaattattggcttgttaataaaactcttacttatttattgtagagagaaataatataacgaaata 40228354  T
Q  224 ataaatggtagggatattacataatttat 252  Q
    |||||||||||||| ||| ||||||||||    
T  40228355 ataaatggtagggacattgcataatttat 40228383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 48436479 - 48436345
Alignment:
Q  102 ttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttattt 194  Q
    ||||| |||||| |||| |||||| |||||||| |||||||||||||||       ||||||||||||||||  ||||| ||||| || |||| ||||||    
T  48436479 ttgtcacttttggagaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattagcttgtcaataatacacttaattattt 48436380  T
Q  195 attgtaaagagaaataatagaatgaaataataaat 229  Q
    |||||| |||||||||||| |||||||||||||||    
T  48436379 attgtagagagaaataatataatgaaataataaat 48436345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 18355875 - 18356027
Alignment:
Q  88 tccgtttca-aacacttgtcgcttttgaagaacaattttatttcacatcacttgtcactttc-------aatgcaacattaattattgacttgttaataa 179  Q
    ||||||||| || |||||||  |||||||||| |||||| |||||| | |||||||||||||       |||||||||||||||||||| || | |||||    
T  18355875 tccgtttcacaatacttgtccattttgaagaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattgatttatcaataa 18355974  T
Q  180 cactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
     || ||||||||||||||||  | ||||||||||||||||||||| |||||||    
T  18355975 tacccttacttatttattgtagagagagaaataatagaatgaaatgataaatg 18356027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 43750341 - 43750252
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| ||||| |||||| | ||||||||||  | ||||||| |||||||||||||||||||||||    
T  43750341 tttcaatgcaacattaattattgtcttgtcaataatactcttgcatatttattgttgagagagaaaaaatagaatgaaataataaatggt 43750252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 48963324 - 48963236
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaat-aatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| ||||| |  ||||  ||||||||||||||||| || |||||||||||||||||||||||    
T  48963324 tttcaatgcaacattaattattgtcttgtcaataatatccttatatatttattgtaaagagagataaatagaatgaaataataaatggt 48963236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 3383281 - 3383193
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| |||||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  3383281 tttcaatgcaacattaattattgtcttgtcaataatactcttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 3383193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 53559683 - 53559768
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaag--agaaataatagaatgaaataataaa 228  Q
    |||||||||||||||||| ||||| || ||||||| ||| |||||||||||||||| ||  | |||||||| ||||||||||||||    
T  53559683 tttcaatgcaacattaatcattgatttattaataatactgttacttatttattgtagagaaataaataataaaatgaaataataaa 53559768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 230
Target Start/End: Original strand, 23087938 - 23088091
Alignment:
Q  88 tccgtttca-aacacttgtcgcttttgaagaacaattttatttcacatcacttgtcactttc-------aatgcaacattaattattgacttgttaataa 179  Q
    ||||||||| || |||||||| |||| ||||| |||||| |||||||  |||||||||||||       ||||||||||||||||||| ||||| |||||    
T  23087938 tccgtttcataatacttgtcgattttaaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataa 23088037  T
Q  180 cactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
     || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  23088038 tacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 23088091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 13703417 - 13703338
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataa 224  Q
    |||||||||||||||||||||||  |||| ||||| || ||| | ||||||||| | ||||||| |||||||||||||||    
T  13703417 tttcaatgcaacattaattattgtgttgtcaataatacccttgcatatttattgcagagagaaaaaatagaatgaaataa 13703338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 13365048 - 13364960
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  13365048 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 13364960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 46694182 - 46694270
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  46694182 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 46694270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 36881485 - 36881398
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaat 229  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| |||||||||||||||    
T  36881485 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaat 36881398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 44522664 - 44522585
Alignment:
Q  153 caacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||| |||||  |||||||||| | | |||| ||||||||||| ||||| |||||| ||| ||||||||||||||    
T  44522664 caacattaaatattggtttgttaataatatttttacatatttattgtagagagatataataaaattaaataataaatggt 44522585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 52009122 - 52009208
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag--aaataatagaatgaaataataaat 229  Q
    |||| |||||||||||||||||| ||||| ||||| |   |||| ||||||||||| ||||  |||||||||||| |||||||||||    
T  52009122 tttcgatgcaacattaattattgtcttgtcaataataacattacctatttattgtagagagataaataatagaataaaataataaat 52009208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 199060 - 198972
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||||  |||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  199060 tttcaatgcaacattaattattgttttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 198972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 19241740 - 19241828
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||||||||| ||||| || ||| | | ||||||||| ||||   ||| | || ||||||||||||||||    
T  19241740 tttcaatgcaacattaattattgacttgtcaataatacccttgcatgtttattgtagagagagaaaaaagtaaaatgaaataataaatg 19241828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 46188967 - 46188886
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaa 228  Q
    |||| ||||||||||||||  |||| ||||| | |||| ||||||||||||  | |||||||||||| ||||||||||||||    
T  46188967 aatgtaacattaattattggtttgtcaataatattcttgcttatttattgtagagagagaaataatataatgaaataataaa 46188886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 54086757 - 54086673
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag--aaataatagaatgaaataataa 227  Q
    ||||||| |||||||||||||||| || | ||||| || ||||| ||| |||| || ||||  ||||||||||||||||||||||    
T  54086757 tttcaatacaacattaattattgatttatcaataatacccttacctatgtattatagagagaaaaataatagaatgaaataataa 54086673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 52805099 - 52805186
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaa--agagaaataatagaatgaaataataaatg 230  Q
    |||| |||||||||| |||||||| || | |||||||| |||||||||| ||||||   || ||||||||| ||| ||||||||||||    
T  52805099 tttcgatgcaacatttattattgatttatcaataacacccttacttattaattgtaggcagggaaataatataataaaataataaatg 52805186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 1455223 - 1455310
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||||||||  |||| |||||||  ||||| ||| ||  ||| || ||||| ||| ||| ||||||||||||||    
T  1455223 tttcaatgcaacattaattattggtttgtcaataacatccttacctatctaccgtagagggaaattatataattaaataataaatggt 1455310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 19897010 - 19897085
Alignment:
Q  153 caacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaa 228  Q
    |||||||||||||||  || | ||||| |  ||||  |||||||| |||| |||||||||||||||||||||||||    
T  19897010 caacattaattattggtttatcaataatatccttatctatttattataaaaagaaataatagaatgaaataataaa 19897085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 37781141 - 37781052
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaaga--gaaataatagaatgaaataataaatggt 232  Q
    ||||||| |||  ||||||||||  |||| ||||| || ||||  ||||||||||| |||  |||||| |||||||||||||||||||||    
T  37781141 tttcaatccaaagttaattattggtttgtcaataatacccttaaatatttattgtagagaaagaaatactagaatgaaataataaatggt 37781052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 29375337 - 29375253
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| |||||  | ||| | ||||||||||| ||| ||| ||   || |||||||||||||||    
T  29375337 tttcaatgcaacattaattattgtcttgtcaataatgcccttgcatatttattgtagagaaaaaaaa---aaagaaataataaatggt 29375253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 39151644 - 39151522
Alignment:
Q  108 cttttgaagaacaattttatttcacatcacttgtcactttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaa 207  Q
    |||||||||||  ||||| ||| |||| |||||||| |||||| |||||||||||||||  ||||| ||| | |||||||| ||||||||||||||||||    
T  39151644 cttttgaagaatgattttgttttacattacttgtcattttcaaggcaacattaattattagcttgtcaatgatactcttacctatttattgtaaagagaa 39151545  T
Q  208 ataatagaatgaaataataaatg 230  Q
    |||||||||| ||||||||||||    
T  39151544 ataatagaataaaataataaatg 39151522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 27563887 - 27564007
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttc-------aatgcaacattaattattgacttgttaataacactcttacttat 192  Q
    |||||||||||||| ||||||||||| ||||| || |||||||||||||       ||||||||||||||||||||||||| ||||| || ||||| |||    
T  27563887 acttgtcgcttttggagaacaattttgtttcatattacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatacccttacctat 27563986  T
Q  193 ttattgtaaagagaaataata 213  Q
    |||||||| ||||||||||||    
T  27563987 ttattgtagagagaaataata 27564007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 26628888 - 26628974
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaat 229  Q
    |||||||||||||||||||||||| || | ||||| || ||||| ||||||||||  | ||||||||||||||||||||||||||||    
T  26628888 tttcaatgcaacattaattattgatttatcaataatacccttacctatttattgtagagagagaaataatagaatgaaataataaat 26628974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 20546313 - 20546448
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttc-------aatgcaacattaattattgacttgttaataacactcttacttat 192  Q
    |||||||  |||||||||| |||||| |||||||  |||||||||||||       ||||||||||||||||||| ||||| ||||| || ||||| |||    
T  20546313 acttgtccattttgaagaataattttgtttcacaatacttgtcactttcaggtttcaatgcaacattaattattgtcttgtcaataatacccttacatat 20546412  T
Q  193 ttattgtaaagagaaataatagaatgaaataataaat 229  Q
    |||||||| ||| ||| |||| |||||||||||||||    
T  20546413 ttattgtagaga-aaaaaatataatgaaataataaat 20546448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 27035200 - 27035111
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||| |||||| |||  | ||||||| |||||||||||||||||||||||    
T  27035200 tttcaatgcaacattaattattgtcttgtcaataatacccttacatatttactgtagagagagaaaaaatagaatgaaataataaatggt 27035111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 13881027 - 13881114
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    ||||||||||| |||||||||||| |||||||||| | ||||||| |||||||||  | |||||| ||||| ||||||||||||||||    
T  13881027 tttcaatgcaatattaattattgatttgttaataataatcttactaatttattgtagagagagaactaatataatgaaataataaatg 13881114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 30906709 - 30906850
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttat 192  Q
    |||||||| |||||||||| |||||||||| |||| |||||| ||||| ||       ||||| |||||||||||| |||||||||| |  |||||||||    
T  30906709 acttgtcgtttttgaagaataattttattttacattacttgttacttttaaattttaatgcaatattaattattgaattgttaataatatccttacttat 30906808  T
Q  193 ttattgta--aagagaaataatagaatgaaataataaatggt 232  Q
    || |||||    ||||||||||||||| ||||||||||||||    
T  30906809 ttgttgtagtgtgagaaataatagaattaaataataaatggt 30906850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 30999596 - 30999683
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| ||||||||||||||||    
T  30999596 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatg 30999683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 3585656 - 3585568
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaaga---gaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||| |||   |||| | || ||||||||||||||||    
T  3585656 tttcaatgcaacattaattattgacttgtcaataatacccttgcatatttattgtagagagaggaaaaagtaaaatgaaataataaatg 3585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 7147118 - 7147030
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  7147118 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 7147030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 11174295 - 11174383
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  11174295 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 11174383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 11646397 - 11646485
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||| ||||   ||| | || ||||||||||||||||    
T  11646397 tttcaatgcaacattaattattgacttgtcaataatacccttgcatatttattgtagagagagaaaaaagtaaaatgaaataataaatg 11646485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 37345776 - 37345688
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  37345776 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 37345688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 40058375 - 40058463
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  40058375 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 40058463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 40918803 - 40918891
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  40918803 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 40918891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 36068285 - 36068224
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga 206  Q
    ||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||| |||||    
T  36068285 tttcaatgcaacattaattattgacttgtcaataatacccttgcatatttattgtagagaga 36068224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 2540002 - 2540091
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||    ||| |||| ||||||||||||||||    
T  2540002 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaaataaaatgaaataataaatg 2540091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 28568123 - 28568036
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||||  || | ||||  || ||||| ||||||||||  | ||||||||||| |||||||||||||||||    
T  28568123 tttcaatgcaacattaattattggtttatcaatattacccttacctatttattgttgagagagaaataattgaatgaaataataaatg 28568036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 28575716 - 28575629
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||||  || | ||||  || ||||| ||||||||||  | ||||||||||| |||||||||||||||||    
T  28575716 tttcaatgcaacattaattattggtttatcaatattacccttacctatttattgttgagagagaaataattgaatgaaataataaatg 28575629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 35866818 - 35866731
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    ||||||| |||||||||||||||  || | ||||| |||||||| ||| ||||||  | |||||||||||||||| ||||||||||||    
T  35866818 tttcaattcaacattaattattggtttatcaataatactcttacatatctattgtagagagagaaataatagaataaaataataaatg 35866731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 43275471 - 43275559
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||  ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  43275471 tttcaatgcaacattaattattatcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 43275559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 28562626 - 28562539
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||||  || | ||||  |||||||| |||||||| |  | ||||||||||| ||||||||| |||||||    
T  28562626 tttcaatgcaacattaattattggtttatcaatattactcttacctatttatttttgagagagaaataattgaatgaaatcataaatg 28562539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 45400842 - 45400927
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataata 226  Q
    |||||||||||||||||||||| | || | ||||| | |||||||||||||||||| ||||    ||| |||| ||||||||||||    
T  45400842 tttcaatgcaacattaattattaatttatcaataatattcttacttatttattgtagagagggagaaaaaatataatgaaataata 45400927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 28326734 - 28326816
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaat 229  Q
    ||||||||| |||||||||  |||| ||||| | |||| | | ||||||||  | ||||||||||||||||||||||||||||    
T  28326734 aatgcaacactaattattggtttgtcaataataatcttgcatgtttattgtggagagagaaataatagaatgaaataataaat 28326816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 10180896 - 10180938
Alignment:
Q  108 cttttgaagaacaattttatttcacatcacttgtcactttcaa 150  Q
    |||||| ||||||||||| |||||||| |||||||||||||||    
T  10180896 cttttggagaacaattttgtttcacattacttgtcactttcaa 10180938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 27941006 - 27941131
Alignment:
Q  102 ttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttattt 194  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||||       ||||||||||||||||| ||||| ||||| || |||||||||||    
T  27941006 ttgtcgcttttggagaacaattttgtttcacattacttgtcactttcaagtttcattgcaacattaattattggcttgtcaataatacccttacttattt 27941105  T
Q  195 attgtaaagagaaataatagaatgaa 220  Q
    |||||| | |||||||||||||||||    
T  27941106 attgtagaaagaaataatagaatgaa 27941131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 3091718 - 3091632
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||| |||||  |||| ||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  3091718 tttcaatgcaacattaaatattggtttgtcaataatacccttacatatttattgtagagagaaat-atagaatgaaataataaatggt 3091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 3498825 - 3498916
Alignment:
Q  143 actttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaa--agagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||| |||||||||||| || |  |||| |||||||| |||||||| |||  ||||||| |||| ||||||||||||||||||    
T  3498825 actttcaatgcaaaattaattattgatttatcgataatactcttacatatttattttaaagagagaaaaaataaaatgaaataataaatggt 3498916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 16662350 - 16662209
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttat 192  Q
    ||||||| ||||||||||| |||||| ||| | || |||||||||||||||       |||||||||||||||||| |||| | ||| || ||||| |||    
T  16662350 acttgtcacttttgaagaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttgtcattaatacccttacctat 16662251  T
Q  193 ttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    |||||||  | ||||||| |||| ||| ||||||||||||||    
T  16662250 ttattgtagatagagaaagaatataataaaataataaatggt 16662209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 17636710 - 17636569
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttat 192  Q
    ||||||| ||||||||||| |||||| ||| | || |||||||||||||||       |||||||||||||||||| |||| | ||| || ||||| |||    
T  17636710 acttgtcacttttgaagaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttgtcattaatacccttacctat 17636611  T
Q  193 ttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    |||||||  | ||||||| |||| ||| ||||||||||||||    
T  17636610 ttattgtagatagagaaagaatataataaaataataaatggt 17636569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 10981713 - 10981625
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga---aataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| |||||   || |||| ||||||||||||||||    
T  10981713 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagagaaaaataaaatgaaataataaatg 10981625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 25614425 - 25614513
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  25614425 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 25614513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 36453196 - 36453284
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  36453196 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 36453284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 27814016 - 27813928
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||||  |||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  27814016 tttcaatgcaacattaattattgtgttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 27813928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 47110655 - 47110594
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga 206  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| |||||    
T  47110655 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagaga 47110594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 8380143 - 8380080
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaa 208  Q
    ||||||| |||||||| ||||||  ||||||| || || ||||||||||||||||| |||||||    
T  8380143 tttcaatacaacattagttattggtttgttaaaaatacccttacttatttattgtagagagaaa 8380080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 39561918 - 39562049
Alignment:
Q  103 tgtcgcttttgaagaacaattttatttcacat--cacttgtcactttcaatgcaacattaattattgacttgttaataacactcttacttatttattgta 200  Q
    ||||| ||||| |||| |||||| |||||| |  ||||| | | |||||||||||||||||||||||  |||| ||||| || |||||||||||||||||    
T  39561918 tgtcgtttttggagaataattttgtttcacttgtcacttttaaatttcaatgcaacattaattattggtttgtcaataatacccttacttatttattgta 39562017  T
Q  201 aagagaaataatagaatgaaataataaatggt 232  Q
     ||||||||||||||||  |||||||||||||    
T  39562018 gagagaaataatagaatacaataataaatggt 39562049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 22388210 - 22388295
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||||| |||| ||||||||||||||||    
T  22388210 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaaaaaataaaatgaaataataaatg 22388295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 1102706 - 1102618
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag-aaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| |||||||| ||| | ||||||||||| |||| ||| |||| ||||||||||||||||||    
T  1102706 tttcaatgcaacattaattattgtcttgtcaataacacccttgcatatttattgtagagagaaaaaaataaaatgaaataataaatggt 1102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 229
Target Start/End: Complemental strand, 4918009 - 4917880
Alignment:
Q  109 ttttgaagaacaattttatttcacatcacttgtcactttc-------aatgcaacattaattattgacttgttaataacactcttacttatttattgtaa 201  Q
    ||||||| |||||||||  ||||||| |||||||||||||       ||| ||||||||||||||| ||||| ||||   | ||||| ||||||| |||     
T  4918009 ttttgaaaaacaattttgcttcacattacttgtcactttcgaattttaattcaacattaattattggcttgtcaatagttcccttacctatttatggtag 4917910  T
Q  202 ag--agaaataatagaatgaaataataaat 229  Q
    ||  ||||||||||||||||||||||||||    
T  4917909 agtgagaaataatagaatgaaataataaat 4917880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 28110167 - 28110250
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaat 229  Q
    |||||||||||||||||||||||  || | ||||| || ||||| |||||||||  |||||||||||| |||| |||||||||||    
T  28110167 tttcaatgcaacattaattattggtttatcaataatacccttacatatttattg-caagagaaataatcgaataaaataataaat 28110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 3519112 - 3519026
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaat 229  Q
    |||||||| |||||||||||||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| |||||||||||||||    
T  3519112 tttcaatgtaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaat 3519026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 37673815 - 37673878
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaa 208  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| |||||||    
T  37673815 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaaa 37673878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 1002805 - 1002890
Alignment:
Q  147 tcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag--aaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||  || ||||| | |  ||||  ||||||||||| ||||  |||||||||||||||||||||||||    
T  1002805 tcaatgcaacattaattattggtttattaattatatccttatctatttattgtagagagagaaataatagaatgaaataataaatg 1002890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 12969812 - 12969901
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| ||||||||||| ||| | ||||| || ||||  ||||||||||  | ||||||| |||||||| ||||||||||||||    
T  12969812 tttcaatgcaatattaattattgtcttctcaataatacccttaaatatttattgtagagagagaaaaaatagaataaaataataaatggt 12969901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 23366994 - 23366906
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||| ||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  23366994 tttcaatacaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 23366906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 39938371 - 39938287
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  39938371 aatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 39938287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 37284590 - 37284672
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaat 229  Q
    |||||||||||||||| ||||||| || | | ||| |||||||| ||||||||||| |||||||| ||||||||||  |||||||    
T  37284590 tttcaatgcaacatta-ttattgatttatcactaatactcttacctatttattgtagagagaaat-atagaatgaagcaataaat 37284672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 24777867 - 24777785
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaa--taatagaatgaaataataaat 229  Q
    |||||||||||||||||||| || ||||||| |   |||  |||||||| || |||||||  |||||||||||||||||||||    
T  24777867 aatgcaacattaattattgatttattaataaaatctttagctatttattctagagagaaaaataatagaatgaaataataaat 24777785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 1646492 - 1646404
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||| ||||  ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  1646492 tttcaatgcaacattaagtattatcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 1646404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 32840275 - 32840331
Alignment:
Q  175 aataacactcttacttatttattgtaaagag--aaataatagaatgaaataataaat 229  Q
    ||||| || |||||||||||||| || ||||  ||||||||||||||||||||||||    
T  32840275 aataatacccttacttatttattttacagagagaaataatagaatgaaataataaat 32840331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 11319757 - 11319676
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatg 230  Q
    ||||||| |||||||||||  || ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  11319757 aatgcaatattaattattggtttattaataatactcttacctatttattgtagagagaaataatagaatgaaataataaatg 11319676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 1056695 - 1056778
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaa 228  Q
    ||||||||||||||||||||||   |||| ||||| ||||||| |||||||||||| |||||||||| |  |||||||||||||    
T  1056695 tttcaatgcaacattaattattagtttgtcaataatactcttatttatttattgtagagagaaataacatgatgaaataataaa 1056778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 7277495 - 7277584
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| ||||||||||| ||||| |||||  | ||||||||||||||||  | ||||||| |||| ||||||||||||||||||    
T  7277495 tttcaatgcaaaattaattattgtcttgtcaataatgcccttacttatttattgtagatagagaaaaaatataatgaaataataaatggt 7277584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 25683301 - 25683390
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||||||||  |||| ||||| || ||||| ||||||||||  | ||||||| |||||||| ||||||||||||||    
T  25683301 tttcaatgcaacattaattattgttttgtcaataatacccttacatatttattgtagagagagaaaaaatagaataaaataataaatggt 25683390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 23097796 - 23097880
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag-aaataatagaatgaaataataaa 228  Q
    ||||||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||| |||||||| ||||||||||    
T  23097796 tttcaatgcaatattaattattgtcttgtcaataatacccttacatatttattgtagagagaaaaaaatagaataaaataataaa 23097880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 12806925 - 12807013
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaaga---gaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| |||   |||| |||| ||||||||||||||||    
T  12806925 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaggaaaaaataaaatgaaataataaatg 12807013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 16054316 - 16054227
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga--aataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||   |||| ||||| || ||||  ||||||||||| |||||  ||||||||||| ||||||||||||||    
T  16054316 tttcaatgcaacattaattattagtttgtcaataatacccttatctatttattgtagagagagaaataatagaataaaataataaatggt 16054227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 21638970 - 21638888
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatgg 231  Q
    ||||||||||||| |||||  |||| |||||  ||||||| ||| ||||||  |||||||||||||| |||||||||||||||    
T  21638970 aatgcaacattaaatattggtttgtcaataattctcttacctatatattgtggagagaaataatagagtgaaataataaatgg 21638888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 37900695 - 37900786
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||| | ||||    ||| |||||||||||||||||||||||    
T  37900695 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgcagagagtgaaaaaaaatagaatgaaataataaatggt 37900786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 39071085 - 39071000
Alignment:
Q  147 tcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga--aataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||  || | |||||  | ||||| ||||||||||| |||||  ||||||||||||||||||||||||    
T  39071085 tcaatgcaacattaattattggtttatcaataatccacttacctatttattgtagagagagaaataatagaatgaaataataaatg 39071000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 40886682 - 40886770
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  40886682 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 40886770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 734411 - 734498
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaa--taatagaatgaaataataaatg 230  Q
    ||||||| |||||||||||||||  || | ||||| |||||||| ||| |||| || |||||||  ||||||||||||||||||||||    
T  734411 tttcaatacaacattaattattggtttatcaataatactcttacctatatattatagagagaaaaataatagaatgaaataataaatg 734498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 36561171 - 36561261
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||| ||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||||    
T  36561171 tttcaatgcaacattaagtattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggt 36561261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 10285130 - 10285217
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  10285130 tttcaatgcaacattaattattgtcttgtcaataatac-cttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 10285217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 25773854 - 25773766
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga---aataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||| |   || |||| ||||||||||||||||    
T  25773854 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagatagagaaaaataaaatgaaataataaatg 25773766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 1056397 - 1056442
Alignment:
Q  185 ttacttatttattgtaaagagaaataatagaatgaaataataaatg 230  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||    
T  1056397 ttacctatttattgtagagagaaataatataatgaaataataaatg 1056442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 11795355 - 11795436
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataata 226  Q
    ||||||||||||||||||||| |  || | ||||| |||||||| |||| ||  ||||||||||||||||||  ||||||||    
T  11795355 tttcaatgcaacattaattataggtttatcaataatactcttacctattcatcataaagagaaataatagaacaaaataata 11795436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 11797751 - 11797663
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgta----aagagaaataatagaatgaaataataaat 229  Q
    ||||||| ||||||||||||||   |||| ||| | || ||| |||||||||||||    ||||||||||||| |||||||||||||||    
T  11797751 tttcaatacaacattaattattagtttgtcaatgatacccttgcttatttattgtagataaagagaaataatataatgaaataataaat 11797663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 30720564 - 30720648
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataata 226  Q
    |||||||||||||||| |||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||    
T  30720564 tttcaatgcaacattagttattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataata 30720648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 18507338 - 18507423
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga-aataatagaatgaaataataaat 229  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||||||||||| || ||||| ||||||| |||||||||||||||    
T  18507338 tttcaatgcaacattaattattgacttgtcaataatattcttacttatttattatagagagagaataatataatgaaataataaat 18507423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 19692927 - 19692827
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg-gtagggatatt 241  Q
    |||||||||||||||||||||||  || | |||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||| ||| |||||||    
T  19692927 tttcaatgcaacattaattattggtttatcaataacacccttacttatttattgtagagagagaaataatagaatgaaataataaatgagtaaggatatt 19692828  T
Q  242 a 242  Q
    |    
T  19692827 a 19692827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 19703512 - 19703412
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg-gtagggatatt 241  Q
    |||||||||||||||||||||||  || | |||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||| ||| |||||||    
T  19703512 tttcaatgcaacattaattattggtttatcaataacacccttacttatttattgtagagagagaaataatagaatgaaataataaatgagtaaggatatt 19703413  T
Q  242 a 242  Q
    |    
T  19703412 a 19703412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 50768067 - 50767982
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag-aaataatagaatgaaataataaat 229  Q
    ||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||| ||| |||| |||||||||||||||    
T  50768067 tttcaatgcaacattaattattgtcttgtcaataatacccttacatatttattgtagagagaaaaaaataaaatgaaataataaat 50767982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 40122559 - 40122647
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag-aaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| |||| ||| |||| ||||||||||||||||||    
T  40122559 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaaaaaaataaaatgaaataataaatggt 40122647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 21064966 - 21064878
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaat 229  Q
    ||||||||||||||||||||||| ||||  ||||| |||||||| ||||||||||| ||||    ||| ||||||||||||||||||||    
T  21064966 tttcaatgcaacattaattattgtcttgacaataatactcttacatatttattgtagagagaaaaaaaaaatagaatgaaataataaat 21064878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 6128949 - 6129108
Alignment:
Q  81 tactttttccgtttca-aacacttgtcgcttttgaagaacaattttatttcacatcacttgtcactttc-------aatgcaacattaattattgacttg 172  Q
    ||||| |||||||||| || || |||||||||||||||| |||||| |||||  | |||||||||||||       |||||||||||||||||||  ||     
T  6128949 tacttcttccgtttcacaatacatgtcgcttttgaagaataattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggttta 6129048  T
Q  173 ttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    | ||||| || ||||  ||||||||||  | ||||||||||| |||||||||||||||||    
T  6129049 tcaataatacccttatctatttattgtagagagagaaataatggaatgaaataataaatg 6129108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 20249086 - 20249175
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||  | ||||||| |||||||| ||||||||||||||    
T  20249086 tttcaatgcaatattaattattgtcttgtcaataatacccttacatatttattgtagagagagaaaaaatagaataaaataataaatggt 20249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 21310626 - 21310542
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||||| || | ||||||||||||||||    
T  21310626 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaaa-aaaaaaatgaaataataaatg 21310542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 22321340 - 22321427
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| ||||||||||||||||    
T  22321340 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatg 22321427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 24706319 - 24706407
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  24706319 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 24706407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 44569042 - 44568954
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  44569042 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 44568954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 14261249 - 14261162
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaat 229  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| |||||||||||||||    
T  14261249 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaat 14261162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 20714426 - 20714510
Alignment:
Q  150 atgcaacattaattattgacttgttaataacactcttacttatttattgta--aagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||  |||| ||||| || |||| ||||||||| ||  |||| |||||||| ||||||||||||||||||    
T  20714426 atgcaacattaattattggtttgtcaataatacccttatttatttattttagaaagataaataatataatgaaataataaatggt 20714510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 12071765 - 12071678
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||| ||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| ||||||||||||||||    
T  12071765 tttcaatgcaacattaattcttgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatg 12071678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 21661607 - 21661697
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||| ||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||||    
T  21661607 tttcaatgcaacattaagtattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggt 21661697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 21670371 - 21670461
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||| ||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||||    
T  21670371 tttcaatgcaacattaagtattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggt 21670461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 31892433 - 31892349
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga-aataatagaatgaaataataaatggt 232  Q
    |||| |||||||||||||| ||||| ||||| |  ||| | ||||||||| ||||||| || |||||||||||||||||||||||    
T  31892433 aatgtaacattaattattgtcttgtcaataatagccttgcatatttattgcaaagagagaaaaatagaatgaaataataaatggt 31892349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 25704856 - 25704768
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||| ||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  25704856 tttcagtgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaaaaaaaaataaaatgaaataataaatg 25704768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 34324655 - 34324742
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||| |||  ||||| ||||| || ||| | ||||||||||  | ||||||| |||| ||||||||||||||||    
T  34324655 tttcaatgcaacattaatgattttcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatg 34324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 50839051 - 50839101
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa 150  Q
    |||||||||||||| |||| |||||| |||||||| |||||||| ||||||    
T  50839051 acttgtcgcttttggagaataattttgtttcacattacttgtcattttcaa 50839101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 32543680 - 32543597
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgta--aagagaaataatagaatgaaataataaatg 230  Q
    ||||| |||||||||||||  |||| | ||| || ||||  |||||||||||  || |||||||||| ||||||||||||||||    
T  32543680 aatgcgacattaattattggtttgtcattaatacccttatctatttattgtagaaaaagaaataataaaatgaaataataaatg 32543597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 23526509 - 23526355
Alignment:
Q  88 tccgtttca-aacacttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataa 179  Q
    ||||||||| || |||||||  |||||||||| |||||| |||||||  |||||||||||||||       ||||||||||||||||| ||||| |||||    
T  23526509 tccgtttcataatacttgtccattttgaagaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataa 23526410  T
Q  180 cactcttacttatttattgtaaag--agaaataatagaatgaaataataaatggt 232  Q
     || ||||| ||||||||||| ||  ||||| |||||||||||||||||||||||    
T  23526409 tacccttacatatttattgtagagatagaaaaaatagaatgaaataataaatggt 23526355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 27143036 - 27143171
Alignment:
Q  102 ttgtcgcttttgaagaacaattttatttcacatcacttgtcact-----ttcaatgcaacattaattattgacttgttaataacactcttacttatttat 196  Q
    |||||||||||| |||| |||||| |||||||| ||||||||||     |||||| |||||||||||||||  |||| ||||| || ||||| ||||||     
T  27143036 ttgtcgcttttggagaataattttgtttcacattacttgtcactcaagtttcaatacaacattaattattggtttgtcaataatacccttacctatttac 27143135  T
Q  197 tgtaaagag--aaataatagaatgaaataataaatg 230  Q
    |||| ||||  |||||||||||||||||||||||||    
T  27143136 tgtagagagagaaataatagaatgaaataataaatg 27143171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 18396899 - 18396810
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||||||||| | |||||  | ||||||||||||||||  | |||||||||||||||||||||||| ||||||    
T  18396899 tttcaatgcaacattaattattgacttttcaataattcccttacttatttattgtagagagagaaataatagaatgaaataatgaatggt 18396810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 40261308 - 40261418
Alignment:
Q  103 tgtcgcttttgaagaacaattttatttcacatcacttgtcac-------tttcaatgcaacattaattattgacttgttaataacactcttacttattta 195  Q
    |||||||||||||||| |||||| |||||||| |||||||||       |||||||||||||||||||||||  |||| ||||| || ||||| ||||||    
T  40261308 tgtcgcttttgaagaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatacccttacatattta 40261407  T
Q  196 ttgtaaagaga 206  Q
    ||||| |||||    
T  40261408 ttgtagagaga 40261418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 24876839 - 24876677
Alignment:
Q  80 ttactttttccgtttca-aacacttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgactt 171  Q
    ||||| ||||||| ||| || |||||||| ||||| |||| |||||| |||||  | |||||||||||||||       ||| |||||||||||||  ||    
T  24876839 ttactctttccgtctcacaatacttgtcgtttttggagaataattttgtttcattttacttgtcactttcaagtgtcaatgcgacattaattattggttt 24876740  T
Q  172 gttaataacactcttacttatttattgta--aagagaaataatagaatgaaataataaatggt 232  Q
    || ||||| ||||||||||||||||| ||   || |||||||||||||||||| |||||||||    
T  24876739 gtcaataatactcttacttatttattctagtgagtgaaataatagaatgaaatgataaatggt 24876677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 3657279 - 3657200
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga--aataatagaatgaaat 222  Q
    |||||||||||||||||||||||  |||| ||||| ||| |||| ||||||||||| |||||  ||||||||||||||||    
T  3657279 tttcaatgcaacattaattattggtttgtcaataatacttttacctatttattgtagagagaggaataatagaatgaaat 3657200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 31003807 - 31003948
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttat 192  Q
    |||| ||||||||| |||| |||||| |||||||| ||||| |||||||||       ||||||||||||| |||  ||||  |||| || ||||| |||    
T  31003807 acttatcgcttttggagaataattttgtttcacattacttgccactttcaagtttcaatgcaacattaattgttggtttgtccataatacccttacctat 31003906  T
Q  193 ttattgtaaagag--aaataatagaatgaaataataaatggt 232  Q
    |||||||| ||||  |||||||||||| ||||||||||||||    
T  31003907 ttattgtagagagagaaataatagaattaaataataaatggt 31003948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 321831 - 321743
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  321831 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagaaaaaaaaataaaatgaaataataaatg 321743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 23045351 - 23045439
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  23045351 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 23045439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 33082949 - 33082860
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgta--aagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| ||||||||||| ||| | ||||| || ||||  |||||||||||  |||||||| |||||||| ||||||||||||||    
T  33082949 tttcaatgcaatattaattattgtcttctcaataatacccttaaatatttattgtagaaagagaaaaaatagaataaaataataaatggt 33082860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 40783729 - 40783817
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  40783729 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 40783817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 46771843 - 46771752
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaatggt 232  Q
    |||||||| |||||||||||||  ||||| ||||| |||||||| ||||||||||| ||||    ||| |||||||||||| ||||||||||    
T  46771843 tttcaatgtaacattaattattttcttgtcaataatactcttacatatttattgtagagagagaaaaaaaatagaatgaaaaaataaatggt 46771752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 47037924 - 47038012
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  47037924 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 47038012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 31061531 - 31061616
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||||||||  |||  ||||| || || || |||||| ||||  ||||||||||| ||||||||||||||||||    
T  31061531 tttcaatgcaacattaattattggtttgacaataataccctcacatatttactgta--gagaaataatataatgaaataataaatggt 31061616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 284538 - 284450
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga---aataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||||||| | ||||| || ||| | ||||||||||| |||||   || | || ||||||||||||||||    
T  284538 tttcaatgcaacattaattattgacttatcaataatacccttgcatatttattgtagagagagagaaaagtaaaatgaaataataaatg 284450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 52037242 - 52037284
Alignment:
Q  190 tatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  52037242 tatttattgtagagagaaaaaatagaatgaaataataaatggt 52037284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 52478170 - 52478084
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaaga--gaaataatagaatgaaataataaat 229  Q
    ||||||| |||||||||||||||| |||| ||||| |  ||||  ||||||| ||| |||  |||||||||||||||||| ||||||    
T  52478170 tttcaattcaacattaattattgatttgtcaataatatccttatctatttatggtagagagggaaataatagaatgaaatgataaat 52478084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 23166923 - 23167004
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaaga--gaaataatagaatgaaataa 224  Q
    ||||||| |||||||||||||||| |||| ||||| |||||||  |||||||| || |||  ||||||||| ||| ||||||    
T  23166923 tttcaatacaacattaattattgatttgtcaataatactcttatctatttattttagagagggaaataataaaataaaataa 23167004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 24771978 - 24772067
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgta--aagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| |||||||||||  || | ||||| |  ||||  |||||||||||  |||||||| |||||||| ||||||||||||||    
T  24771978 tttcaatgcaatattaattattgttttttcaataatagccttaaatatttattgtagaaagagaaaaaatagaataaaataataaatggt 24772067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 51064826 - 51064911
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag--aaataatagaatgaaataataaa 228  Q
    |||||||||||| |||||||||   || | ||||| || ||||| ||||||||||| ||||  |||||||| ||||||||||||||    
T  51064826 tttcaatgcaacgttaattattagtttatcaataatacccttacctatttattgtagagagagaaataatataatgaaataataaa 51064911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 1837900 - 1837990
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaatgg 231  Q
    |||||||||||||||||||||||| || | ||||| || || |  ||||||||||||||||    ||||||||  || |||||||||||||    
T  1837900 tttcaatgcaacattaattattgatttatcaataataccctaatctatttattgtaaagagagagaaataatatgataaaataataaatgg 1837990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 27211027 - 27211080
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattg 198  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | |||||||||    
T  27211027 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattg 27211080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 40052536 - 40052604
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataata 213  Q
    |||||||||||||||||||||||  |||| ||||| |   || |||||||||| || ||||||||||||    
T  40052536 tttcaatgcaacattaattattggtttgtcaataatatcgttgcttatttattatagagagaaataata 40052604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 7925 - 7788
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcactttcaa-------tgcaacattaattattgacttgttaataacactcttacttat 192  Q
    |||||||| |||| ||||| ||||||| ||||||| |||||||||||||||       ||||||||||||||| |  |||| ||||| |||||||| |||    
T  7925 acttgtcgtttttaaagaataattttaattcacattacttgtcactttcaagttttaatgcaacattaattatcggtttgtcaataatactcttacctat 7826  T
Q  193 ttattgtaaa--gagaaataatagaatgaaataataaa 228  Q
    ||||||||||  |||||| |||||||||||||||||||    
T  7825 ttattgtaaagagagaaacaatagaatgaaataataaa 7788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 15395 - 15482
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||||||||||||| |  |||| ||||| || ||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  15395 tttcaatgcaacattaattatcggtttgtcaataatacgcttacttttttattgtagagagaaataattgaatgaaataataaatggt 15482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 6972 - 7056
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag--aaataatagaatgaaataataa 227  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||  |||||||| ||| |||||||||    
T  6972 tttcaatgcaacattaattattgacgtgtcaataatactcttacttatttattgtagagagaaaaataatataataaaataataa 7056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 17942648 - 17942560
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag-aaataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||||||||  |||| ||||| || ||||| ||||||||||| |||| ||| |||| ||||||||||||||||||    
T  17942648 tttcaatgcaacattaattattgttttgtcaataatacccttacatatttattgtagagagaaaaaaataaaatgaaataataaatggt 17942560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 31559810 - 31559896
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga-aataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||| || || | ||||||||||||||||    
T  31559810 tttcaatgcaacattaattattgtcttgttaataatacccttgcatatttattgtagagagagaaaaaaaaaatgaaataataaatg 31559896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 8626687 - 8626599
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  8626687 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 8626599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 29260397 - 29260309
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  29260397 tttcaatgcaacattaattactgtcttgtcaataatacccttacatatttattgtagagagagaaaaaaataaaatgaaataataaatg 29260309  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 13757412 - 13757328
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataa 227  Q
    ||||||||||||||||||||||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| |||||||||||||    
T  13757412 tttcaatgcaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataa 13757328  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 1605783 - 1605696
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatg 230  Q
    ||||||| ||||||||||||||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| ||||||||||||||||    
T  1605783 tttcaatacaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaataaaatgaaataataaatg 1605696  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 8235830 - 8235741
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaatg 230  Q
    ||||||||||| ||||||||||| ||| | ||||| || ||||| ||||||||||| ||||    ||| |||||||||||||||||||||    
T  8235830 tttcaatgcaatattaattattgtcttatcaataatacccttacatatttattgtagagagataaaaaaaatagaatgaaataataaatg 8235741  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 15064767 - 15064856
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgt--aaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||| ||||||||||||||| ||||| ||||| || ||| | ||||||||||  | ||||||| |||| ||| ||||||||||||||    
T  15064767 tttcaatacaacattaattattgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaatataatcaaataataaatggt 15064856  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 4129631 - 4129542
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga---aataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||| |||| ||||| ||||| || ||| | ||||||||||| |||||   || |||| ||||||||||||||||||    
T  4129631 tttcaatgcaacattaat-attgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggt 4129542  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 14287190 - 14287107
Alignment:
Q  147 tcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag--aaataatagaatgaaataataaa 228  Q
    ||||||||||| |||||||||| || |  |||| |||||||| || |||||||| ||||  |||||||| ||||||||||||||    
T  14287190 tcaatgcaacactaattattgatttatccataatactcttacctagttattgtagagagataaataataaaatgaaataataaa 14287107  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 20398314 - 20398401
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag----aaataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||| | |||| ||||| || ||||| |||||||| || ||||    |||||||| ||| ||||||||||||||    
T  20398314 aatgcaacattaattattaaattgtcaataatacccttacctatttattatacagagagaaaaataatataataaaataataaatggt 20398401  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 30734555 - 30734643
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagag---aaataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||||||  ||| | ||||| || ||| | ||||||||||| ||||   ||| |||| ||||||||||||||||    
T  30734555 tttcaatgcaacattaattattatcttatcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatg 30734643  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 847849 - 847909
Alignment:
Q  146 ttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga 206  Q
    ||||||||||||||||||||||  |||| ||||| |||||||  ||||||||  |||||||    
T  847849 ttcaatgcaacattaattattgctttgtcaataatactcttaaatatttattacaaagaga 847909  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 1814847 - 1814803
Alignment:
Q  103 tgtcgcttttgaagaacaattttatttcacatcacttgtcacttt 147  Q
    |||| ||||||||||| ||||||||||||| | ||||||||||||    
T  1814847 tgtcacttttgaagaataattttatttcactttacttgtcacttt 1814803  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 30235439 - 30235467
Alignment:
Q  202 agagaaataatagaatgaaataataaatg 230  Q
    |||||||||||||||||||||||||||||    
T  30235439 agagaaataatagaatgaaataataaatg 30235467  T

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Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 10942 - 10862
Alignment:
Q  150 atgcaacattaattattgacttgttaataacactcttacttatttattgtaaagagaaataatagaatgaaataataaatg 230  Q
    |||||||||||| |||||| |||| ||||| | |||||| ||||||||||  |||||||||||| | ||||||||||||||    
T  10942 atgcaacattaaatattgatttgtcaataatattcttacctatttattgtggagagaaataatatagtgaaataataaatg 10862  T

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Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 343 - 425
Alignment:
Q  149 aatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga-aataatagaatgaaataataaatg 230  Q
    ||||||||||||||||||| ||||| ||||| |   |||| ||||||||||| ||||| || |||||||||||||||||||||    
T  343 aatgcaacattaattattgtcttgtcaataatatcattacatatttattgtagagagagaaaaatagaatgaaataataaatg 425  T

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Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 71340 - 71233
Alignment:
Q  100 acttgtcgcttttgaagaacaattttatttcacatcacttgtcac-------tttcaatgcaacattaattattgacttgttaataacactcttacttat 192  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||       ||| ||||||| |||||||||||  |||||||| | || ||||| |||    
T  71340 acttgtcgtttttgaagaataattttatttcacattacttgtcacttttaagtttgaatgcaaaattaattattggtttgttaattatacccttacctat 71241  T
Q  193 ttattgta 200  Q
    ||||||||    
T  71240 ttattgta 71233  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 65237 - 65325
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttat-tgtaaagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| |||||||||||  |||| ||||| || ||||  ||||||| |  ||||||||| |||||||||||||||||||||||    
T  65237 tttcaatgcaatattaattattggtttgtcaataatacccttatctatttatgtagaaagagaaaaaatagaatgaaataataaatggt 65325  T

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Target: scaffold1770 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 366 - 277
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgtaaagaga---aataatagaatgaaataataaatggt 232  Q
    |||||||||||||||||| |||| ||||| ||||| || ||| | ||||||||||| |||||   || |||| ||||||||||||||||||    
T  366 tttcaatgcaacattaat-attgtcttgtcaataatacccttgcatatttattgtagagagagaaaaaaataaaatgaaataataaatggt 277  T

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Target: scaffold0054 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 45658 - 45569
Alignment:
Q  145 tttcaatgcaacattaattattgacttgttaataacactcttacttatttattgta--aagagaaataatagaatgaaataataaatggt 232  Q
    ||||||||||| |||||||||||  || | ||||| |  ||||  |||||||||||  |||||||| |||||||| ||||||||||||||    
T  45658 tttcaatgcaatattaattattgtattatcaataataaccttaaatatttattgtagaaagagaaaaaatagaataaaataataaatggt 45569  T

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