View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12126_low_3 (Length: 317)
Name: NF12126_low_3
Description: NF12126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12126_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 78 - 317
Target Start/End: Original strand, 1815843 - 1816078
Alignment:
| Q |
78 |
caggtctggagaacttgttaattacatttcttccaagccatctgcttccgaactcatgcgagcaatggatgagatttcagacactgtaactaactaacta |
177 |
Q |
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| T |
1815843 |
caggtctggagaacttgttaattacatttcttccaagccgtctgcttccgaactcatgcgagcaatggatgagatttcagacactgtaac----taacta |
1815938 |
T |
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| Q |
178 |
actaaccaactgctttcattcattactcattgaatttgattggatgcatgtgtaacaaagttttacatgacctgtgcataaaattaatctcttaaggatt |
277 |
Q |
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| T |
1815939 |
actaactaactgctttcattcattactcattgaatttgattggatgcatgtgtaacaaagttttacatgacctgtgcataaaattaatctcttaaggatt |
1816038 |
T |
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| Q |
278 |
tgtaagaaagttttctataatgcccttaatttaaaataga |
317 |
Q |
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| T |
1816039 |
tgtaagaaagttttttataatgtccttaatttaaaataga |
1816078 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 19726824 - 19726792
Alignment:
| Q |
210 |
aatttgattggatgcatgtgtaacaaagtttta |
242 |
Q |
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| T |
19726824 |
aatttgattggatgcatgtgtaaaaaagtttta |
19726792 |
T |
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