View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_high_1 (Length: 954)
Name: NF12127_high_1
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 898; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 898; E-Value: 0
Query Start/End: Original strand, 8 - 940
Target Start/End: Original strand, 6314855 - 6315788
Alignment:
| Q |
8 |
gcagaacctgtgaccgttagggaattaaaagcacacaagtggattgcaaaaagggacagaagtcactctttcccttcctacacacagcacctcctaaggc |
107 |
Q |
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| T |
6314855 |
gcagaacctgtgactgttagggaattaaaagcacacaagtggattgcaaaaagggccagaagtcactctttcccttcctacacacagcacctcctaaggc |
6314954 |
T |
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| Q |
108 |
atatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
207 |
Q |
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| T |
6314955 |
atatcttctttgaatggcaagagactacaacagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
6315054 |
T |
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| Q |
208 |
agtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttg |
307 |
Q |
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| T |
6315055 |
aatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttg |
6315154 |
T |
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| Q |
308 |
gaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacac |
407 |
Q |
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| T |
6315155 |
gaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacac |
6315254 |
T |
|
| Q |
408 |
gaggcatatagtagatggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagat-ggatccct |
506 |
Q |
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| T |
6315255 |
gaggcatatagtagatggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgggatccct |
6315354 |
T |
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| Q |
507 |
ttacaaatgaagatgaagtgatggctttatggagggttatggagtgagcaaatagtacggggacaattgtgactgactgcaaattggttgttaatacaat |
606 |
Q |
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| T |
6315355 |
ttacaaatgaagatgaagtgacggctttatggagggttatggagtgagcaaatagtacggggacaattgtgactgactgcaaattggttgttaatacaat |
6315454 |
T |
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| Q |
607 |
ggctcatagtttttggctataactgagtttagatccatgatttcaaaatggagaggccgtattaatgtaaaaccaaacttaagggttaattttataagga |
706 |
Q |
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| T |
6315455 |
ggctcatagtttttggctataactgagtttagatccatgatttcaaaatggagaggccgtattaatgtaaaaccaaacttaagggttaattttataagga |
6315554 |
T |
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| Q |
707 |
tgcaagccaatcaagttgctcatccgttagcaaaagtatctcatttactgctagtcacaaaattcctttgattattgaagaaatgatatggatttgttac |
806 |
Q |
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| T |
6315555 |
tgcaagccaatcaagttgctcatccgttagcaaaagtatctcatttactgctagtcacaaaattcctttgattattgaagaaatgatatggatttgttac |
6315654 |
T |
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| Q |
807 |
tttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaatatccaccacttccatactagaactgtcattagattgttatctttt |
906 |
Q |
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| T |
6315655 |
tttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaatatccaccacttccatactagaactgtcattagattgttatctttt |
6315754 |
T |
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| Q |
907 |
gcaaaggaagaattgtcattacattatgatcaca |
940 |
Q |
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| T |
6315755 |
gcaaaggaagaattgtcattacattatgatcaca |
6315788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 6318086 - 6318236
Alignment:
| Q |
107 |
catatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgca |
206 |
Q |
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| T |
6318086 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggt--cagtttcatcatgtgga |
6318183 |
T |
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| Q |
207 |
gag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
257 |
Q |
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| T |
6318184 |
gagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 936
Target Start/End: Original strand, 51819641 - 51819723
Alignment:
| Q |
857 |
tgaatatccaccacttccatactagaactgtcattagattg---ttatcttttgcaaaggaagaattgtcattacattatgat |
936 |
Q |
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| T |
51819641 |
tgaatatccaccactttcatgctagaactgtatttagattagtattatatttttcaaaggaggaattgtcattacattatgat |
51819723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 747
Target Start/End: Original strand, 55322830 - 55322887
Alignment:
| Q |
690 |
ggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatct |
747 |
Q |
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||||||||||||||||| |||| ||| |||||||||||| | |||| |||||||||| |
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| T |
55322830 |
ggttaattttataaggagacaagtcaaacaagttgctcattcattagaaaaagtatct |
55322887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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