View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_high_8 (Length: 241)
Name: NF12127_high_8
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_high_8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 52176136 - 52175914
Alignment:
| Q |
19 |
agaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatcgttttgtcgacgccacaagcaccataacattatta |
118 |
Q |
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| T |
52176136 |
agaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatcgttttgtcgacgccacaagcaccataacattatta |
52176037 |
T |
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| Q |
119 |
caatgtcctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagttagatacagcagcagcagcatccattattatatccca |
218 |
Q |
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| T |
52176036 |
caatgtcctggcacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagttagatacagcagcagcagcatccattattatatccca |
52175937 |
T |
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| Q |
219 |
tagcccagctacttgccaaactt |
241 |
Q |
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| T |
52175936 |
tagcccagctgcttgccaaactt |
52175914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 25500558 - 25500338
Alignment:
| Q |
18 |
aagaacctcgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatcgttttgtcgacgccacaagcaccataacattatt |
117 |
Q |
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| T |
25500558 |
aagaacctctcgcgctaaatacacagccatctgcacatctttcatttctccctcccacaccttatcgtttcgtcgacgccacaagcaccataatatcatt |
25500459 |
T |
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| Q |
118 |
acaatgtcctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagttagatacagcagcagcagcatccattattatatccc |
217 |
Q |
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| T |
25500458 |
gcaatgtcgtggcacttctgtttagaacacctgcataataactgaaaaatacattcagcaaaattaga---aacagcaacagcttccattattatatccc |
25500362 |
T |
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| Q |
218 |
atagcccagctacttgccaaactt |
241 |
Q |
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| T |
25500361 |
atagcccagctacttgccacactt |
25500338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 6508555 - 6508728
Alignment:
| Q |
26 |
cgcgcgctaaatgcacagccagccgcacatctttcatgtctccctcccacaccttatcgttttgtcgacgccacaagcaccataacattattacaatgtc |
125 |
Q |
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| T |
6508555 |
cgcgagctaaatgcacaaccagccgcacttctttcatatcaccttcctacactttattattccttctacgccataaacaccataacatcatcgcgatatc |
6508654 |
T |
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| Q |
126 |
ctgacacatttgtttagaacacctgcataataactaaaaaatgcattcagcaaagttagatacagcagcagcagc |
200 |
Q |
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| T |
6508655 |
ttgacatgtttgatcggaac-cctgcacaataaccgaaaaatgcattctgcaaagttagaaacagcagcagcagc |
6508728 |
T |
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