View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_low_2 (Length: 641)
Name: NF12127_low_2
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 629
Target Start/End: Original strand, 33886479 - 33887080
Alignment:
| Q |
19 |
aaagctcagctgagatttgttgcagaaaaactagctttgttgtatccgacataa-agagaaattaagcagttatactatataattatatctgtacaaaat |
117 |
Q |
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| T |
33886479 |
aaagctcagctgagatttgttgcaaaaaaactagctttgttgtatcccacataatagagaaattaagcagttatactatataattatatctgtacaaaaa |
33886578 |
T |
|
| Q |
118 |
ttttaaccatcaacagcatcaccatctctccatgttgcacggtcaatttcttttaaccttgtgtcaggttagtttacttatgcggtcaccttgtctagtg |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33886579 |
ttttaaccgtcaacagcatcaccatctctccatgttgcacggtcaatttcttttaaccttgtgtcaggttagtttacttatgcggtcaccttgtctagtg |
33886678 |
T |
|
| Q |
218 |
ggcaccactgctgctcactactctctacaacccttgagcaataaattaccgctttcacgcatttgaaacatcgataacacacattcaaaatgccgagttt |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33886679 |
ggcaccactactgctcactactctctacaacccttgagcaataaattaccgctttcacgcatttgaaacatcgataacacacattcaaaatgctgagttt |
33886778 |
T |
|
| Q |
318 |
gaatttaaatcgattatcgatgtcttgaatgcgtgaaaacctataatctctgctaagtaagtactaactcaccctctcctctcccctccccttgagcaca |
417 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33886779 |
gaatttaaaacgattatcgatgtcttgaatgcgtgaaaacctataatctctgctaagtaagtactaact----------------ctccccttgagcaca |
33886862 |
T |
|
| Q |
418 |
ctccataa------ctctctctgacactaaaactaaaaacgcacgcactctaannnnnnnccactactctctctttctctcattcaagacattcaatgca |
511 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
33886863 |
ctccataactctctctctctctgacactaaaactaaaaatgcacgcactctaatttttttccactactctctctatctctcattcaagacattcaatgca |
33886962 |
T |
|
| Q |
512 |
aacgaacccactcataacgaccctccaacggcatgtctctaacaatatcaaagttgtacctacaaacaacgcagcaaagttgttagttagttagggtttg |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
33886963 |
aacgaacccactcataacgaccctccaacggcatgtctctaacaatatcaaagttgtacctacaaacaacgcagtaaagttgttggttagttagggtttg |
33887062 |
T |
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| Q |
612 |
attctgccactgcacagg |
629 |
Q |
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|||||||||||||||||| |
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| T |
33887063 |
attctgccactgcacagg |
33887080 |
T |
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