View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_low_3 (Length: 570)
Name: NF12127_low_3
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 2 - 552
Target Start/End: Original strand, 40456809 - 40457359
Alignment:
| Q |
2 |
acatttagagtaggaacaaataagacatcggatattgttagggacggtgagagagatacagtaccaacacattcaataggagattggactccattgacat |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40456809 |
acatttagagtaggaacaaataagacatcggatattgttagggacggtgagagagatacagtaccaacaccttcaataggagattggactccattgacat |
40456908 |
T |
|
| Q |
102 |
taataatgacagttttggaacaataaggagaaaaattagtaaatatgtgtggatcacaagtcatatgatcagaagcacctgtatcaattatccaatcact |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456909 |
taataatgacagttttggaacaataaggagaaaaattagtaaatatgtgtggatcacaagtcatatgatcagaagcacctgtatcaattatccaatcact |
40457008 |
T |
|
| Q |
202 |
agccctagtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttcc |
301 |
Q |
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| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457009 |
atccttagtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttcc |
40457108 |
T |
|
| Q |
302 |
ttgttattggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457109 |
ttgttattggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtac |
40457208 |
T |
|
| Q |
402 |
acttgtgaattcctttcttaggatacttcttgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcaca |
501 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40457209 |
acttgcgaattcctttcttaggatacttcttgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcaca |
40457308 |
T |
|
| Q |
502 |
aacaattgcataaacagcttgaacgcttgggagtggagttgtagcaagaac |
552 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40457309 |
aacaattgcataaacagcttgaacgcttgggagtggagttgtagcaagaac |
40457359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 40089352 - 40089288
Alignment:
| Q |
157 |
acaagtcatatgatcagaagcacctgtatcaattatccaatcactagccctagtaacaacagaaa |
221 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||||| ||| || | | |||||||||||||| |
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| T |
40089352 |
acaagtcatatgatgagttgcaccagtatcaattatccattcattatcacaagtaacaacagaaa |
40089288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 549
Target Start/End: Original strand, 56392868 - 56393401
Alignment:
| Q |
10 |
agtaggaacaaataagacatcggatattgttagggacggtgagagagatacagtaccaacacattcaataggagattggactccattgacattaataatg |
109 |
Q |
| |
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||||||||||||||||||||| ||||||| || ||| ||||| || |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
56392868 |
agtaggaacaaataagacatcagatattgataaggagggtgaaagggatacagtaccaacaccttcaataggagatgggactccattggcattaataatg |
56392967 |
T |
|
| Q |
110 |
acagttttggaacaataag-----gagaaaaa-ttagtaaatatgtgtggatcacaagtcatatgatcagaagcacctgtatcaattatccaatcactag |
203 |
Q |
| |
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| |||||| ||| | || |||||||| |||||||||| || | |||||||||||||| |||| ||| |||||||| ||||||||||| ||| |
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| T |
56392968 |
atagttttagaattagaaccaccagagaaaaaattagtaaatacatgacgttcacaagtcatatggtcagtagcccctgtatcgattatccaatctctac |
56393067 |
T |
|
| Q |
204 |
ccctagtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttcctt |
303 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||| | || || ||||| ||||| | |||||||| |||| |
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| T |
56393068 |
ccctagtaacaacagaaagattaagagcagagttagatatacctgacttggttacgaatcctgcagccgtaga------------attattttctgcctt |
56393155 |
T |
|
| Q |
304 |
gttattggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacac |
403 |
Q |
| |
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|| ||||| || ||| |||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
56393156 |
attgctggaattattttttccttttggatgccaatctggatatccatggagtttaaaacatgcttccactacatgattatcaccattacagtgggtacac |
56393255 |
T |
|
| Q |
404 |
ttgtgaattcctttcttaggatacttcttgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaa |
503 |
Q |
| |
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|| ||| ||||||||| ||||||||||| |||| | ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
56393256 |
ttacgaactcctttcttgggatacttcttcacagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaa |
56393355 |
T |
|
| Q |
504 |
caattgcataaacagcttgaacgcttgggagtggagttgtagcaag |
549 |
Q |
| |
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|| ||||||| || | |||||| ||||||| ||||| |||||||| |
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| T |
56393356 |
cagttgcatacactgattgaacatttgggagcggagtggtagcaag |
56393401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 10 - 549
Target Start/End: Original strand, 27517109 - 27517639
Alignment:
| Q |
10 |
agtaggaacaaataagacatcggatattgttagggacggtgagagagatacagtaccaacacattcaataggagattggactccattgacattaataatg |
109 |
Q |
| |
|
||||||||||||||||||||| ||||||| || ||| ||||| || |||||||||||||||| || |||||||||| ||||||||||| ||||||||||| |
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| T |
27517109 |
agtaggaacaaataagacatcagatattgataaggagggtgaaagggatacagtaccaacaccttaaataggagatgggactccattggcattaataatg |
27517208 |
T |
|
| Q |
110 |
acagttttggaacaataaggaga---aaaattagtaaatatgtgtggatcacaagtcatatgatcagaagcacctgtatcaattatccaatcactagccc |
206 |
Q |
| |
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| |||||| ||| | || ||| |||||||||||||| || | |||||||||||||| |||| ||| |||||||| ||||||||||| ||| ||| |
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|
| T |
27517209 |
atagttttagaattagaaccagaggaaaaattagtaaatacatgacgttcacaagtcatatggtcagtagcccctgtatcgattatccaatctctacccc |
27517308 |
T |
|
| Q |
207 |
tagtaacaacagaaagattaatagcagagttagatatacctgactttgttgcaaaaccagcagcagtagaaacatggcccttaatattttcttccttgtt |
306 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||| | || || ||||| ||||| | |||||||| |||| || |
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|
| T |
27517309 |
tagtaacaacagaaagattaagagcagagttagatatacctgacttggttacgaatcctgcagccgtaga------------attattttctgccttatt |
27517396 |
T |
|
| Q |
307 |
attggaagtagatttgccttttgggtgccaatctggataaccatggagtttaaaacatgtttccttgacatgattatcaccattacagtgggtacacttg |
406 |
Q |
| |
|
||||| || ||| |||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
27517397 |
gatggaattattttttccttttggatgccaatctggatatccatggagtttaaaacatgcttcaactacatgattatcaccattacagtgggtacactaa |
27517496 |
T |
|
| Q |
407 |
tgaattcctttcttaggatacttcttgacagcaagggcagacccctcgaaagactcactaccaagcatagcttcttggcgatttgcctcagcacaaacaa |
506 |
Q |
| |
|
||| ||||||||| ||||||||||| |||| | ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
27517497 |
cgaactcctttcttgggatacttcttcacagagaaaacagacccctgagtaggctcactaccaagcatagcttcttggcgatttgcttcagcacaaacag |
27517596 |
T |
|
| Q |
507 |
ttgcataaacagcttgaacgcttgggagtggagttgtagcaag |
549 |
Q |
| |
|
||||||| || | |||||| ||||||| ||||| |||||||| |
|
|
| T |
27517597 |
ttgcatacactgattgaacatttgggagcggagtggtagcaag |
27517639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 4242912 - 4242848
Alignment:
| Q |
157 |
acaagtcatatgatcagaagcacctgtatcaattatccaatcactagccctagtaacaacagaaa |
221 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| ||| || | | |||||||||||||| |
|
|
| T |
4242912 |
acaagtcatatgatgagttgcaccagtatcaattatccattcattatcacaagtaacaacagaaa |
4242848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 8017774 - 8017710
Alignment:
| Q |
157 |
acaagtcatatgatcagaagcacctgtatcaattatccaatcactagccctagtaacaacagaaa |
221 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| ||| || | | |||||||||||||| |
|
|
| T |
8017774 |
acaagtcatatgatgagttgcaccagtatcaattatccattcattaccacaagtaacaacagaaa |
8017710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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