View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_low_5 (Length: 441)
Name: NF12127_low_5
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 780540 - 780114
Alignment:
| Q |
1 |
aaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttagaaaaataacacaaatatatgtcgcaggtaagatttatctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
780540 |
aaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttc-aaaaataacacaaatatatgtcgcaggtaagatttatctttt |
780442 |
T |
|
| Q |
101 |
gatagtaactccgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacaga |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780441 |
gatagtaactgcgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacaga |
780342 |
T |
|
| Q |
201 |
tgacaaatcctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctccagatccatgccattacc |
300 |
Q |
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| T |
780341 |
tgacaaaccctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctccagatccatgccattacc |
780242 |
T |
|
| Q |
301 |
atgatttggag-tgtccattataaagaacaaaggtgtnnnnnnnccttaaaatagtaaagttgataaccatttagtgttatttgttactattccag---- |
395 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780241 |
ttgatttggagctgtccattataaagaacaaaggtgtaaaaaaaccttaaaatagtaaagttgataaccatttagtgttatttgttactattccagtagc |
780142 |
T |
|
| Q |
396 |
taatgaatagttaagtgatataaaacac |
423 |
Q |
| |
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| T |
780141 |
taatgaatagttaagtgatataaaacac |
780114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 118 - 329
Target Start/End: Original strand, 770921 - 771133
Alignment:
| Q |
118 |
tataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacagatgacaaatcctgatttt |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
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| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccctttgagtccaacttttagatggttcttcttaatctcacagatgacaaaccctgatttt |
771020 |
T |
|
| Q |
218 |
gttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctccagatccatgccattaccatgatttggag-tgtcc |
316 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||| | ||||| |
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| T |
771021 |
gttccatttggcactggaacattcacattcagctcttgcaaagtttgagtccaggaatacttctccaaatccataccattaccctgatttggtgctgtcc |
771120 |
T |
|
| Q |
317 |
attataaagaaca |
329 |
Q |
| |
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|||||||| |||| |
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| T |
771121 |
attataaaaaaca |
771133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 127 - 332
Target Start/End: Complemental strand, 785110 - 784904
Alignment:
| Q |
127 |
gtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacagatgacaaatcctgattttgttccattt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| ||| |
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|
| T |
785110 |
gtaaaagcttacatcaataattggtggctgccctttgattccaacttttagatggttcttctttatctcacatgtgacaaaccttgattttgttccgttt |
785011 |
T |
|
| Q |
227 |
ggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctccagatccatgccattaccatgatttggag-tgtccattataaag |
325 |
Q |
| |
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||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||| ||||| |||| |||| |||| |||| |
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| T |
785010 |
ggcactggaacattcacattgagctcttgaagagtttgagtccaagaatatttctccagatccataccattaccctgattgggagctgtcaattaaaaag |
784911 |
T |
|
| Q |
326 |
aacaaag |
332 |
Q |
| |
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| ||||| |
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|
| T |
784910 |
agcaaag |
784904 |
T |
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