View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_low_6 (Length: 388)
Name: NF12127_low_6
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 376
Target Start/End: Complemental strand, 9214397 - 9214025
Alignment:
| Q |
6 |
aggagcacagaagagtttaatgctggacacgctcctggtgcaattaacataccttatatgtacaaagttggatcaggttctaattcaattctcaaacact |
105 |
Q |
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| T |
9214397 |
aggaccacggaagagtttaatgctggacacgctcctggtgcaattaacataccttatatgtacaaagttggatcaggttctaattcaattctcaaacact |
9214298 |
T |
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| Q |
106 |
atgttaaattattgttgattgtcataagtctaagagatataataatactcttagccattagatcaatcaaacgaaacgactgaggtttgatagaataggt |
205 |
Q |
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| T |
9214297 |
atgttaaattattgttgattgtcataagtctaagagatataataatactcttagccattagatcaatcaa-----acgactgaggtttgatagaataggt |
9214203 |
T |
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| Q |
206 |
tgtaattgtaagagatcaaattgataat-------ccattagtgtccttttctctaatctattcatatagtgtttgatgttaatgtaaattattttctca |
298 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9214202 |
tgtaattgtaagagatcaaattgataatccattgaccattaatgtccttttctctaatctattcatatagtgtttgatgttaatgtaaattattttctca |
9214103 |
T |
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| Q |
299 |
tgtattcagggatgacaaagaacagcaattttgttaaagaggtctcctcacattttagaaaagaagatgaagttattg |
376 |
Q |
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| T |
9214102 |
tgtattcagggatgacaaagaacagcaattttgttaaagaggtctcctcacattttagaaaagaagatgaagttattg |
9214025 |
T |
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