View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12127_low_7 (Length: 305)
Name: NF12127_low_7
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4089287 - 4089575
Alignment:
| Q |
1 |
catgcttgaatttaagaactaaaccagattcaaattctacaggtttttccatgttaagtgaatgacgaaatatatattttctatacaaatgaatcaaagt |
100 |
Q |
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| T |
4089287 |
catgcttgaagttaagaactaaaccatattcaagttctacaggtttttccatgttaagtgaatgacgaaatatatattttctatacaaatgaatcaaagt |
4089386 |
T |
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| Q |
101 |
aagcttgatctcttgcaaagaaaatttctgtccaatacatgcccttggacctattccaaatggtatgaatgcataagggtgccttcgtttcatttcttca |
200 |
Q |
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| T |
4089387 |
aagcttgatctcttgcaaagaaaatttctgtccaatacatgcccttggacctattccaaatggtatgaatgcataagggtgccttcgtttcatttctcca |
4089486 |
T |
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| Q |
201 |
cattttgggtcaaacctctctggtttgaatttttctggctctgcatagtttcttgagtcttttgctagaactccaagtgctaaccatac |
289 |
Q |
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| T |
4089487 |
cattttgggtcaaacctctctggtttgaatttttctggctctgcatagtttcttgagtcttttgctagaactccaagtgctaaccatac |
4089575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4084118 - 4084300
Alignment:
| Q |
1 |
catgcttgaatttaagaactaaaccagattcaaattctacaggtttttccatgttaagtgaatgacgaaa-tatatattttctatacaaatgaatcaaag |
99 |
Q |
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|||||||||| || | |||||||||| |||||| ||||||| |||||||||||| |||||||| | ||| || |||||||||||| ||||||||||||| |
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| T |
4084118 |
catgcttgaagttgaaaactaaaccatattcaagttctacatgtttttccatgtcaagtgaataaaaaaaatacatattttctatataaatgaatcaaag |
4084217 |
T |
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| Q |
100 |
taagcttgatctcttgcaaagaaaatttctgtccaatacatgcccttggacctattccaaatggtatgaatgcataagggtgc |
182 |
Q |
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| T |
4084218 |
ttaggttgatctattggaagaaaaatttatatccaatacatacccttggaccaattccaaatggtatgaatgcataagggtgc |
4084300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 101 - 286
Target Start/End: Complemental strand, 48184265 - 48184080
Alignment:
| Q |
101 |
aagcttgatctcttgcaaagaaaatttctgtccaatacatgcccttggacctattccaaatggtatgaatgcataagggtgccttcgtttcatttcttca |
200 |
Q |
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||||||||||||||||| ||||||||||| ||||| || || || ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
48184265 |
aagcttgatctcttgcatggaaaatttctgaccaatgcaagctctaggaccaattccaaatggtatgaaagcataagggtgtctttgtttcatttcttcg |
48184166 |
T |
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| Q |
201 |
cattttgggtcaaacctctctggtttgaatttttctggctctgcatagtttct-tgagtcttttgctagaactccaagtgctaacca |
286 |
Q |
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| T |
48184165 |
cagttagggtcaaacctttctggtttgaacttttctggctctggaaagtttttgtga-tcttttgctagaactccaagggctaacca |
48184080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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