View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12127_low_8 (Length: 267)
Name: NF12127_low_8
Description: NF12127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12127_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 35271236 - 35271474
Alignment:
| Q |
14 |
atgatatccagttgtcggtgtacctcaaacactcaagttactagttagtataatggttaaggtaagtaagaggtttaaaatgagacataccttatgtaat |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
35271236 |
atgatatccaattgtcggtgtacctcaaacactcaagttactagttagtataatgattaaggcgagtgagaggtttaaaatgagacataccttaggtaat |
35271335 |
T |
|
| Q |
114 |
gttactcaaaaacaatattattgacaaattaacaaaggaaaatgtttcttaaaaattccaatgtgtatacacgtcttaagagagatagagataaaagaga |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35271336 |
ggtactcaaaaacaatattattgacaaattaacaaaggaaaatgtttcttagaaatttcaatgtgtatacacgccttaagagagatagagataaaagaga |
35271435 |
T |
|
| Q |
214 |
gtgatgtactagatgcaataaattaatgatgtgaaagaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35271436 |
gtgatgtactagatgcaataaattaatgatgtgatagaa |
35271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University