View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_high_10 (Length: 219)
Name: NF12128_high_10
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 151913 - 152105
Alignment:
| Q |
11 |
aagcagagaacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatc |
110 |
Q |
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| T |
151913 |
aagcaaagaacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatc |
152012 |
T |
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| Q |
111 |
atggaacttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaaatcatttagatggaaacat |
203 |
Q |
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| T |
152013 |
atggaacttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacat |
152105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 160354 - 160540
Alignment:
| Q |
17 |
agaacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaa |
116 |
Q |
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| T |
160354 |
agaacaagaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaa |
160453 |
T |
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| Q |
117 |
cttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaaatcatttagatggaaacat |
203 |
Q |
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| T |
160454 |
cttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacat |
160540 |
T |
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