View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_high_2 (Length: 672)
Name: NF12128_high_2
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 50 - 664
Target Start/End: Complemental strand, 42672274 - 42671651
Alignment:
| Q |
50 |
ttaaggatgatgagtatgattacttaccccttttcgagcacaaaatcctcggaaggggagaaagaactgatgcaattcttcttcggtaggtggacgacct |
149 |
Q |
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| T |
42672274 |
ttaaggatgatgagtatgattactgaccccttttcgagcacaaaatcctcggaaggggagaaagaactgatgcaattcttcttcggtaggtggacgacct |
42672175 |
T |
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| Q |
150 |
tgtttagggatagcatcaaattcatctgcataaacaagaaaagccaataattatgaataattatggaagcatgcaattaattaaccaatttgtgttgatg |
249 |
Q |
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| T |
42672174 |
tgtttagggatagcatcaaattcatctgcataaacaagaaaaaccaataattatgaataattatggaagcatgcaattaattaaccaatttgtgttgatg |
42672075 |
T |
|
| Q |
250 |
gaaaagggtaattacttgaattgaagggcttggttctaacgtgaatgagggtgcatgacgcgtacttgtccaaaaggtgatcaacggcccactttacagc |
349 |
Q |
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| T |
42672074 |
gaaaagggtaattacttgaattgaagggcttggttctaacgtgaatgagggtgcatgacgcgtatttgtccaaaaggtgatcaacggcccactttacagc |
42671975 |
T |
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| Q |
350 |
gtgttggctgttcttgtctgaatcaatggcgatcacggtggaggattcttcttctccatttgaagccatagagaaagtggttaatgtttacaattattaa |
449 |
Q |
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| T |
42671974 |
gtgttggctgttcttgtctgaatcaatggcgatcacggtggaggattcttcttctccatttgaagccatagagaaagtggttaatgtttacaattattaa |
42671875 |
T |
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| Q |
450 |
tctttgtaagaaaaaataaccaatatgttacatatgtttttcgttaaggaatatgttacatatgttgacgacgagatttttgcaacatgcattgacg--- |
546 |
Q |
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| T |
42671874 |
tctttgtaagaaaaaataaccaatatgttacatatgtttttcgttaaggaatatgttacatatgttgacgacgagatttttgtaacatgcattgacgatt |
42671775 |
T |
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| Q |
547 |
------actatttttggtgggaataacaaatcaaaatagattataccagaaaggattaacaactatttgttacaaacatcttcatacagttttacaaata |
640 |
Q |
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| T |
42671774 |
cttttaactatttttggtgggaataacaaatcaaaatagattataccagaaaggattaacaactatttgttacaaacatcttcatacagttttacaaata |
42671675 |
T |
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| Q |
641 |
caaattaattgaccattctctgct |
664 |
Q |
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| T |
42671674 |
caaattaattgaccattctctgct |
42671651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 6513038 - 6512953
Alignment:
| Q |
72 |
cttaccccttttcgagcacaaaatcctcggaaggggagaaagaactgatgcaattcttcttcggtaggtggacgaccttgtttagg |
157 |
Q |
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||||||||||||| |||||||||||| |||||||| ||||| || || ||||||||||| | || ||||||||||| |||||||| |
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| T |
6513038 |
cttaccccttttctagcacaaaatccacggaagggaagaaaaaattggtgcaattcttcatgagttggtggacgaccatgtttagg |
6512953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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