View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_high_3 (Length: 605)
Name: NF12128_high_3
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 12 - 605
Target Start/End: Complemental strand, 48948118 - 48947521
Alignment:
| Q |
12 |
aacctgtgaatgtcatccatgtcattcaggaaggcaaacttagccaagtgaaactgtcattctaataacataataaaaagattttatagattttggagtt |
111 |
Q |
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| T |
48948118 |
aacctgtgaatgtcatccatgtcattcaggaaggtaaacttagccaagtgaaactgtcattctaataacataataaaaagattttatagattttggagtt |
48948019 |
T |
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| Q |
112 |
taaagcatttcaaaacgattgttgagataattaaaataaaagatggaactcaagtctactagattaggagagcactatcccagcacaattaattgatggt |
211 |
Q |
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| T |
48948018 |
taaagcatttcaaaacgattgttgagataattaaaataaaagatggaactcaagtctactagattaggagagcactatcccagcacaattaattgatggt |
48947919 |
T |
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| Q |
212 |
cccccataatatttaattattttcagttttacctta-----ataagcaaaaatccactaatactttaagagcttgagtctaataaaatcatgtcgaagcg |
306 |
Q |
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| T |
48947918 |
cccccataatatttaattattttcagttttaccttagggtaataagcaaaaatccactaatactttaagagcttgagtctaataaaatcatgtcgaagcg |
48947819 |
T |
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| Q |
307 |
tacacacattacaaatacatacttgcagaaggtgtctataccaaaaaatcaaatgattaatagtcaaaatccacacagcatggcatctaaaaatgacttc |
406 |
Q |
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| T |
48947818 |
tacacacattacaaatacatacttgcagaaggtgtctataccaaaaaatcaaatgattaatagtcaaaatccacacagcatggcatctaaaaatgacttc |
48947719 |
T |
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| Q |
407 |
tagaatgttacctagtagaagaacaatttaataagcatgataaattccactattccacagcagccaatgatatacgaatttgcatatagacagacattat |
506 |
Q |
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| T |
48947718 |
tagaatgttacctagtagaagaacaatttaataagcatgataaattccactattccacagcagccaatgatatacgaatttgcatatagacagacatta- |
48947620 |
T |
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| Q |
507 |
tttctactgccgtagtagattaaaaattgaatatctagcattaaaacagtttaaagttgttccgcgatgcacattagcagcaggctgataagatatatg |
605 |
Q |
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| T |
48947619 |
cttctactgccgtagtagattaaaaattgaatatctagcattaaaacagtttaaagttgttccgcgatgcacattagcagcaggctgataagatatatg |
48947521 |
T |
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