View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_high_5 (Length: 376)
Name: NF12128_high_5
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 41366012 - 41365669
Alignment:
| Q |
19 |
gtaacagattcatcagatgatgatgctgttaccccaaaaccaggtacattaagatatggtgtgataaaaaatgaaccattgtggatagtgttccctagta |
118 |
Q |
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| T |
41366012 |
gtaacagattcatcagatgatgatgctgttaccccaaaaccaggtacattaagatatggtgtgataaaaaatgaaccattgtggatagtgttccctagta |
41365913 |
T |
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| Q |
119 |
acatgatgattaagctgaagcaagagcttatatttaatagttataagactattgacggacgtggagctgatgttcacattgtgggaggaggatgcattac |
218 |
Q |
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| T |
41365912 |
acatgatgattaagctgaagcaagagcttatatttaatagttataagactattgacggacgtggagctgatgttcacattgtgggaggaggatgcattac |
41365813 |
T |
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| Q |
219 |
tttgcagtttattagtaatgttatcatacataacattcatattcaccattgtcacccctcaggtaattaacaannnnnnnncctaaactttattatacta |
318 |
Q |
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| T |
41365812 |
tttgcagtttattagtaatgttataatacataacattcatattcaccattgtcacccctcaggtaattaacaattttttttcctaaactttattatacta |
41365713 |
T |
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| Q |
319 |
ttctgctttgaaaggatatgacaaaacataactgcattgtgcaca |
363 |
Q |
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| T |
41365712 |
ttctgctttg-aaggatatgacaaaacataactgcactgtgcaca |
41365669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 27623818 - 27624080
Alignment:
| Q |
22 |
acagattcatcagatgatgatgctgttaccccaaaaccaggtacattaagatatggtgtgataaaaaatgaaccattgtggatagtgttccctagtaaca |
121 |
Q |
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| T |
27623818 |
acagattcctcagacaatgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggattgtgtttccaagtaaca |
27623917 |
T |
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| Q |
122 |
tgatgattaagctgaagcaagagcttatatttaatagttataagactattgacggacgtggagctgatgttcacattgtgggaggaggatgcattacttt |
221 |
Q |
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| T |
27623918 |
tgatgattaagttgtctcaagagcttatttttaatagcttcaaaaccattgatggtcgtggtgctgatgttcatattgttggtggtggttgcatcactct |
27624017 |
T |
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| Q |
222 |
gcagtttattagtaatgttatcatacataacattcatattcaccattgtcacccctcaggtaa |
284 |
Q |
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|||| ||| ||||||||||| ||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
27624018 |
tcagtatataagtaatgttattatacataacattcatgttcatcattgtcatccctcaggtaa |
27624080 |
T |
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