View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_low_1 (Length: 718)
Name: NF12128_low_1
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 16 - 627
Target Start/End: Original strand, 38841353 - 38841964
Alignment:
| Q |
16 |
catacatgttttttcttaaggaagtaattgatgagttagtttattagagcttgagttgtttttatattatcttagttgaggattatatatagggaagtta |
115 |
Q |
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| T |
38841353 |
catacatgttttttcttgaggaagtaattgatgagttagtttattagagcttgagttgtttttatgttatcttagttgaggattatatatagggaagtta |
38841452 |
T |
|
| Q |
116 |
tatgatattgtaggatatggtatcttgctttattaaaagtttgaatttaactattgctataatttggtacttagaccctagttgtttattacttaaatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38841453 |
tatgatattgtaggatatggtatcttgctttattaaaagtttgaatttaactattgctataatttggtacttagaccctagttgtttattacttaaatta |
38841552 |
T |
|
| Q |
216 |
gattagttgctatatgaatgcactacatttttaactcttattttaaaaattgtcctgatgctgcaccatcctcgtacatgatactatatgtgtataatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38841553 |
gattagttgctatatgaatgcactacatttttaactcttgttttaaaaattgtcctgatgctgcaccatcctcgtacatgatactatatgtgtataatat |
38841652 |
T |
|
| Q |
316 |
attatggttgcctactttcctagctataccgtattataatatgtttggatccgaaacaaattaaatccctttttccatatgaaatatttgttttattaca |
415 |
Q |
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| T |
38841653 |
attatggttgcctactttcctagctataccgtattataatatgtttggatccgaaacaaattaaatccctttttccatatgaaatatttgttttattaca |
38841752 |
T |
|
| Q |
416 |
attacaatctttatgcaagtggttagattgcaattagtatttagtttaaaaaatcgtgattcctaactaaagcagggtatcgtaaatgacaacaattgat |
515 |
Q |
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| T |
38841753 |
attacaatctttatgcaagtggttagattgcaattagtatttagtttaagaaatcgtgattcctaactaaagcagggtatcgtaaatgacaacaattgat |
38841852 |
T |
|
| Q |
516 |
caaattggcaaaatgtttaagctaaatttgatctgcaatctaatataatttaattatctaatatactagttctctacagctgtgcttttatagggaaagt |
615 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38841853 |
caaattgacaaaatgtttaagctaaatttgatctgcaatctaatataatttaattatctaatatactagttctctacagctgtgcttttatagggaaagt |
38841952 |
T |
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| Q |
616 |
gcttgtggaaag |
627 |
Q |
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|||||||||||| |
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| T |
38841953 |
gcttgtggaaag |
38841964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 38859288 - 38859381
Alignment:
| Q |
229 |
atgaatgcactacatttttaactcttattttaaaaattgtcctgatgctgcaccatcctcgtacatgatactatatgtgtataatatattatggt |
323 |
Q |
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| T |
38859288 |
atgaatgcactacacgtttaactctcatcttaaaaattgtgctgat-ctgcatcatcctcgtacatgacactatatgtgtctaatatattatggt |
38859381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 38861999 - 38862167
Alignment:
| Q |
46 |
atgagttagtttattagagcttgagttgtttttatatt--atcttagttgaggattatatatagggaagtt-----atatgatattgtaggatatggtat |
138 |
Q |
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||||||||||| |||||||||||||||| | |||| || ||||||||| ||| |||||||||||||||| ||||| || ||||||||| |||| |
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| T |
38861999 |
atgagttagttaattagagcttgagttgctgttatgttgtatcttagtt-aggggtatatatagggaagtttaaaaatatggta--gtaggatatagtat |
38862095 |
T |
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| Q |
139 |
cttgctttattaaaagtttgaatttaactattgctataatttggtacttagaccctagttgtttattactta |
210 |
Q |
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| T |
38862096 |
cttgcttttactaaagtttgagtttaactattattataatttggtgcttagaccctagttgcttgttactta |
38862167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 168
Target Start/End: Original strand, 38865438 - 38865563
Alignment:
| Q |
49 |
agttagtttattagagcttgagttgtttttatattatcttagttgaggattatatatagggaagtta------tatgatattgtaggatatggtatcttg |
142 |
Q |
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||||| || ||||||| |||||||||| ||| ||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
38865438 |
agttatttaattagagattgagttgttggtatgttatcttagatgaggattatatatagggaagttatactcgtatg-tatggtaggatatggtatcttg |
38865536 |
T |
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| Q |
143 |
c-tttattaaaagtttgaatttaacta |
168 |
Q |
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| T |
38865537 |
cttttatttaaagtttcaaattaacta |
38865563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 564
Target Start/End: Original strand, 38862386 - 38862520
Alignment:
| Q |
428 |
atgcaagtggttagattgcaattagtatttagtttaaaaaatcgtgattcctaactaaagcagggtatcgtaaat-gacaacaattgatcaaattggcaa |
526 |
Q |
| |
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|||||||||||||||| | ||| ||||| |||||| || ||||| |||||| ||||||||||||| ||||| | |||||| |||||||||| ||| |
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| T |
38862386 |
atgcaagtggttagatcgtaata--tatttggtttaagaagtcgtggctcctaattaaagcagggtat-ttaaatagcaaacaatagatcaaattgacaa |
38862482 |
T |
|
| Q |
527 |
aatgtttaagctaaatttgatctgcaatctaatataat |
564 |
Q |
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||| ||||||||||||||||| ||||||||||| |||| |
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| T |
38862483 |
aatatttaagctaaatttgatttgcaatctaatctaat |
38862520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 667 - 704
Target Start/End: Original strand, 38842005 - 38842042
Alignment:
| Q |
667 |
agcttcttgggttgattataacaatggattagcgcaca |
704 |
Q |
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| T |
38842005 |
agcttcttgggttgattataacaatggattagcgcaca |
38842042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 38850465 - 38850410
Alignment:
| Q |
126 |
taggatatggtatcttgctttattaaaagtttgaatttaactattgctataatttg |
181 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
38850465 |
taggatatggtatcttgcttttattaaagtttgaatttaactattattataatttg |
38850410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 569
Target Start/End: Original strand, 38865851 - 38865931
Alignment:
| Q |
497 |
gtaaatgacaacaattgatc----aaattggcaaaatgtttaagc----taaatttgatctgcaatctaatataatttaat |
569 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
38865851 |
gtaaatgacaacaattgatcgatcaaattgacaaaatgtttaagctaattaaatttgatctgcaatctaatgtaatgtaat |
38865931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 560
Target Start/End: Complemental strand, 38850345 - 38850280
Alignment:
| Q |
498 |
taaatgacaacaattgatcaaattggcaaaatgtttaagcta---aatttgatctgcaatctaata |
560 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
38850345 |
taaatgacaataatacatcaaattggcaaaatgtttaagctaattaatttgatatgcaatccaata |
38850280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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