View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12128_low_4 (Length: 576)

Name: NF12128_low_4
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12128_low_4
NF12128_low_4
[»] chr6 (3 HSPs)
chr6 (317-541)||(14197585-14197809)
chr6 (310-346)||(21979754-21979790)
chr6 (306-335)||(21015737-21015766)
[»] chr4 (12 HSPs)
chr4 (464-516)||(45372021-45372073)
chr4 (307-423)||(48852595-48852708)
chr4 (310-358)||(48891347-48891395)
chr4 (306-353)||(45384965-45385012)
chr4 (478-517)||(48156378-48156417)
chr4 (306-423)||(49044226-49044340)
chr4 (465-514)||(7771458-7771507)
chr4 (465-514)||(7790143-7790192)
chr4 (310-355)||(48705454-48705499)
chr4 (465-509)||(45366183-45366227)
chr4 (384-424)||(48147755-48147795)
chr4 (319-355)||(48147812-48147848)
[»] chr5 (1 HSPs)
chr5 (468-516)||(179112-179160)
[»] chr3 (2 HSPs)
chr3 (341-431)||(11024559-11024646)
chr3 (307-355)||(47452002-47452050)
[»] chr8 (1 HSPs)
chr8 (307-352)||(4032008-4032053)
[»] chr1 (1 HSPs)
chr1 (384-425)||(24367150-24367191)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 317 - 541
Target Start/End: Complemental strand, 14197809 - 14197585
Alignment:
Q  317 acaaatacctttgtctcctcttgattccaatttagatgccaaggattcatgttttcttctatatagctttgggtatgacctgtcaaccgatgattacttg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  14197809 acaaatacctttgtctcctcttgattccaatttagatgccaaggattcatgttttcttctatatggctttgggtatgacctgtcaaccaatgattacttg 14197710  T
Q  417 gtggtttcggtgtccgctgatacatacttagccttagataatatgttttcacatttggagattttctcattgagaaataatacttggaaagaacttgagg 516  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14197709 gtggttttggtgtccgctgatacatacttagccttagataatatgttttcacatttggagattttctcattgagaaataatacttggaaagaacttgagg 14197610  T
Q  517 catctcgcaccacttgtaggattgt 541  Q
    |||||||||||||||||||||||||    
T  14197609 catctcgcaccacttgtaggattgt 14197585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 21979790 - 21979754
Alignment:
Q  310 ttcacaaacaaatacctttgtctcctcttgattccaa 346  Q
    |||| ||||||||||||||||||||||||||||||||    
T  21979790 ttcaaaaacaaatacctttgtctcctcttgattccaa 21979754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 21015737 - 21015766
Alignment:
Q  306 agagttcacaaacaaatacctttgtctcct 335  Q
    ||||||||||||||||||||||||||||||    
T  21015737 agagttcacaaacaaatacctttgtctcct 21015766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 45372073 - 45372021
Alignment:
Q  464 ttcacatttggagattttctcattgagaaataatacttggaaagaacttgagg 516  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  45372073 ttcacatttggagtttttctcattgagagataatacttggagagaacttgagg 45372021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 48852595 - 48852708
Alignment:
Q  307 gagttcacaaacaaatacctttgtctcctcttgattccaatttagatgccaaggattcatgttttcttctatatagctttgggtatgacctgtcaaccga 406  Q
    ||||||||||||||||||||||||||||  ||||||| |  ||||||| ||   |||  |||| |||   |||| | ||||||||||||| |||||||||    
T  48852595 gagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatct---atatggttttgggtatgacccgtcaaccga 48852691  T
Q  407 tgattacttggtggttt 423  Q
    |||||||||||| ||||    
T  48852692 tgattacttggtagttt 48852708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 48891347 - 48891395
Alignment:
Q  310 ttcacaaacaaatacctttgtctcctcttgattccaatttagatgccaa 358  Q
    |||||||||||||||||||||||||| ||||||| |  |||||||||||    
T  48891347 ttcacaaacaaatacctttgtctcctattgattcgaggttagatgccaa 48891395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 45385012 - 45384965
Alignment:
Q  306 agagttcacaaacaaatacctttgtctcctcttgattccaatttagat 353  Q
    |||||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  45385012 agagttcacaaagaaatacctttgtctccttttggttctaatttagat 45384965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 517
Target Start/End: Complemental strand, 48156417 - 48156378
Alignment:
Q  478 ttttctcattgagaaataatacttggaaagaacttgaggc 517  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  48156417 ttttttcattgagagataatacttggaaagaacttgaggc 48156378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 49044340 - 49044226
Alignment:
Q  306 agagttcacaaacaaatacctttgtctcctcttgattccaatttagatgccaaggattcatgttttcttctatatagctttgggtatgacctgtcaaccg 405  Q
    ||||||||||||||||||||||||||||||  || |||| ||||| | | |||  ||||    || | ||||||| | ||||||||||| | |||||| |    
T  49044340 agagttcacaaacaaatacctttgtctccttatggttcctatttacaagtcaatcattc---cttacatctatattgttttgggtatgatccgtcaacag 49044244  T
Q  406 atgattacttggtggttt 423  Q
    ||||||| ||||||||||    
T  49044243 atgattatttggtggttt 49044226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 7771458 - 7771507
Alignment:
Q  465 tcacatttggagattttctcattgagaaataatacttggaaagaacttga 514  Q
    |||||||||||| |||||||||| ||| ||||||| ||||||||| ||||    
T  7771458 tcacatttggaggttttctcatttagagataatacgtggaaagaaattga 7771507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 7790143 - 7790192
Alignment:
Q  465 tcacatttggagattttctcattgagaaataatacttggaaagaacttga 514  Q
    |||||||||||| |||||||||| ||| ||||||| ||||||||| ||||    
T  7790143 tcacatttggaggttttctcatttagagataatacgtggaaagaaattga 7790192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 48705499 - 48705454
Alignment:
Q  310 ttcacaaacaaatacctttgtctcctcttgattccaatttagatgc 355  Q
    |||||||||||||||||||||| ||| ||| |||| ||||||||||    
T  48705499 ttcacaaacaaatacctttgtcaccttttggttccgatttagatgc 48705454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 45366227 - 45366183
Alignment:
Q  465 tcacatttggagattttctcattgagaaataatacttggaaagaa 509  Q
    ||||| |||||||||||||||||||||  |||||| |||||||||    
T  45366227 tcacacttggagattttctcattgagagctaatacatggaaagaa 45366183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 48147795 - 48147755
Alignment:
Q  384 tttgggtatgacctgtcaaccgatgattacttggtggtttc 424  Q
    ||||||||||||| || ||| ||||||||||||||||||||    
T  48147795 tttgggtatgaccagttaacagatgattacttggtggtttc 48147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 48147848 - 48147812
Alignment:
Q  319 aaatacctttgtctcctcttgattccaatttagatgc 355  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  48147848 aaatacctttgtctccttttggttccaatttagatgc 48147812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 179112 - 179160
Alignment:
Q  468 catttggagattttctcattgagaaataatacttggaaagaacttgagg 516  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  179112 catttggagattttctcattgagagataatacatggaaagaaattgagg 179160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 11024646 - 11024559
Alignment:
Q  341 ttccaatttagatgccaaggattcatgttttcttctatatagctttgggtatgacctgtcaaccgatgattacttggtggtttcggtgtcc 431  Q
    ||||||||||||||||||  ||||||||| |||   |||| | |||||||||||||  ||||  ||||||||||||||||| || ||||||    
T  11024646 ttccaatttagatgccaaatattcatgttgtct---atatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcc 11024559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 47452050 - 47452002
Alignment:
Q  307 gagttcacaaacaaatacctttgtctcctcttgattccaatttagatgc 355  Q
    ||||||||||||||||||||||| ||||| ||| ||||||| |||||||    
T  47452050 gagttcacaaacaaatacctttgcctccttttggttccaatgtagatgc 47452002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 4032053 - 4032008
Alignment:
Q  307 gagttcacaaacaaatacctttgtctcctcttgattccaatttaga 352  Q
    |||||||||||||||||||||| |||||| || |||||||| ||||    
T  4032053 gagttcacaaacaaatacctttatctcctattaattccaatctaga 4032008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 24367150 - 24367191
Alignment:
Q  384 tttgggtatgacctgtcaaccgatgattacttggtggtttcg 425  Q
    ||||||||||||  |||||| |||||||||||||||||||||    
T  24367150 tttgggtatgacaagtcaacagatgattacttggtggtttcg 24367191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University