View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_low_5 (Length: 402)
Name: NF12128_low_5
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 114 - 389
Target Start/End: Original strand, 49452195 - 49452470
Alignment:
| Q |
114 |
gctagcacaagctagctagggtaatagtattatataaatttgatttgatgaacaagtcatggattaataatatatttgacgagtacaaaaacatttagga |
213 |
Q |
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| T |
49452195 |
gctagcacaagctagctagggtaatagtattatataaatttgatttgatgaacaagtcatggattaataatatatttgatgagtacaaaaacatttagga |
49452294 |
T |
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| Q |
214 |
atgaattgacaagcgttccaatgaatcttactttggctattcgctgctacgatcgcgtttataacttatagtctatgttatgtgnnnnnnncttcttgtt |
313 |
Q |
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| T |
49452295 |
atgaattgacaagcgttccaatgaatcttactttggctattcgctgctacgatcgcgtttataacttatagtctatgttatgtgtttttttcttcttgtt |
49452394 |
T |
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| Q |
314 |
tttctaacgagtnnnnnnnnnnnnnttagagaatgcaatggtttgtacactcgcattcaaatggaatcagtcacag |
389 |
Q |
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| T |
49452395 |
tttctaacgagtaaaaattaaaaaattagagaatgcaatggtttgtacactcgcattcaaatggaatcagtcacag |
49452470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 49452113 - 49452173
Alignment:
| Q |
20 |
gtgtgcttgttgctttgctttgaggccaaccaccacttcttcatcatcatcgccatggctc |
80 |
Q |
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| T |
49452113 |
gtgtgcttgttgctttgatttgaggccaaccaccacttcttcatcatcatcgccatggctc |
49452173 |
T |
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