View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12128_low_6 (Length: 397)
Name: NF12128_low_6
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_low_6 |
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| [»] scaffold0390 (4 HSPs) |
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| [»] scaffold0786 (2 HSPs) |
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| [»] scaffold1678 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 32240530 - 32240912
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggttgtgccaatagaattttcacaacattaagtggcctttattttatttttggt |
100 |
Q |
| |
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|||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32240530 |
ccaataacacatttttgcagagaaataaataatttaaacagatacaggttgtaccaatagaattttcacaacattaagtggcctttattttatttttcgt |
32240629 |
T |
|
| Q |
101 |
ttaggattaacgaataagttgaatgattgttttatcaaagcttgtccacaccaaactggttttcaagcctttcacaatcaggagcaattttcttttctct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
32240630 |
ttaggattaacgaataagttgaatgattgttttatcaaagcttgtccacaccaaactggttttcaagcctttcacaatcaggagcaatattcttttctct |
32240729 |
T |
|
| Q |
201 |
gaatataagggtattaagaatgcgaaccatggaatcaggacccacgttcttggttgggacaatcctgtcggatttgttccccattaaatgttgacatgta |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||| |
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| T |
32240730 |
gaatataagggtattaagaatgcgaaccacggaatcaggacccacgttcttggttgggacaatcatggcggatttgttctccattaaatgtgtacatgta |
32240829 |
T |
|
| Q |
301 |
ccctttttattttcgggtttcaccatgcaaacgtcttctttgtgattacctttacatacaatcgtgtagaaaccatctttgtc |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32240830 |
ccctttttattttcgggtttcaccatgcaaacgtcttctttgtgattacctttacatacaatcatgtagaaaccatctttgtc |
32240912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 24428894 - 24429281
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggttgtgccaatagaattttcacaacattaagtggcctttattttatttttggt |
100 |
Q |
| |
|
||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |
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| T |
24428894 |
ccaacaaaacatttttgcagagaaata-ataatttaaacagatacaggttgtgccaatagaattttcacaacattaagtgacttttattttatttttcgt |
24428992 |
T |
|
| Q |
101 |
ttaggattaacgaataagttgaatgattgttttatcaa------agcttgtccacaccaaactggttttcaagcctttcacaatcaggagcaattttctt |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| ||||| |||||||||| ||| |||| ||| ||||| ||||||| |||||| |||| |||| |
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| T |
24428993 |
ttaggattaatgaataagttgaatgattatttaatcaatcatcaagcttgtccaaacccaactcttttacaagcttttcacattcaggatcaatactctt |
24429092 |
T |
|
| Q |
195 |
ttctctgaatataagggtattaagaatgcgaaccatggaatcaggacccacgttcttggttgggacaatcctgtcggatttgttccccattaaatgttga |
294 |
Q |
| |
|
|||||| |||||||||| ||||| ||| ||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||| |||| || | | |
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|
| T |
24429093 |
ttctctaaatataaggggattaacaatacgaaccaaggaatcacgacccacgttcttggtggggacaatcatgtcggatttgttctccataaaccctgta |
24429192 |
T |
|
| Q |
295 |
catgtaccctttttattttcgggtttcaccatgcaaacgtcttctttgtgattacctttacatacaatcgtgtagaaaccatctttgtc |
383 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
24429193 |
catgtaccctttgtattttcgggtttcaccatgcaaacgtcttcctcgtgatcacctttacatacaatcatgtagaaaccatctttgtc |
24429281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22138331 - 22138465
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggt----tgtgccaatagaattttcacaacattaagtggcctttattttatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22138331 |
ccaacaacacatttttgcagagaaata-ataatttaaacatatacaggtcaattgtgccaatagaattttcacaacattaagtggcttttattttatttt |
22138429 |
T |
|
| Q |
97 |
tggtttaggattaacgaataagttgaatgattgttt |
132 |
Q |
| |
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| ||||| |||||| ||||||||||||||||||||| |
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| T |
22138430 |
tcgtttacgattaatgaataagttgaatgattgttt |
22138465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 32296192 - 32296052
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggt----tgtgccaatagaattttcacaacattaagtggcctttattttatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||| |
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| T |
32296192 |
ccaacaacacatttttgcagagaaata-ataatttaaacagatacaggtcaattgtgccaatataaatttcacaacattaagtggcttttattttatttt |
32296094 |
T |
|
| Q |
97 |
tggtttaggattaacgaataagttgaatgattgttttatcaa |
138 |
Q |
| |
|
| | ||||| |||| ||||||||||||||||||||| ||||| |
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|
| T |
32296093 |
ttgattaggtttaatgaataagttgaatgattgtttaatcaa |
32296052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 22138624 - 22138678
Alignment:
| Q |
285 |
taaatgttg-acatgtaccctttttattttcgggtttcaccatgcaaacgtcttc |
338 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
22138624 |
taaatgttgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttc |
22138678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 32303725 - 32303669
Alignment:
| Q |
103 |
aggattaacgaataagttgaatgattgttttatca--aagcttgtccacaccaaact |
157 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||||||| ||| |||| |
|
|
| T |
32303725 |
aggattaatgaataagttgaatgattgtttaatcatcaagcttgtccaaacccaact |
32303669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2933 - 2799
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggt----tgtgccaatagaattttcacaacattaagtggcctttattttatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2933 |
ccaacaacacatttttgcagagaaata-ataatttaaacatatacaggtcaattgtgccaatagaattttcacaacattaagtggcttttattttatttt |
2835 |
T |
|
| Q |
97 |
tggtttaggattaacgaataagttgaatgattgttt |
132 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2834 |
tcgtttacgattaatgaataagttgaatgattgttt |
2799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 15917 - 15783
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggt----tgtgccaatagaattttcacaacattaagtggcctttattttatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15917 |
ccaacaacacatttttgcagagaaata-ataatttaaacatatacaggtcaattgtgccaatagaattttcacaacattaagtggcttttattttatttt |
15819 |
T |
|
| Q |
97 |
tggtttaggattaacgaataagttgaatgattgttt |
132 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
15818 |
tcgtttacgattaatgaataagttgaatgattgttt |
15783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 2640 - 2586
Alignment:
| Q |
285 |
taaatgttg-acatgtaccctttttattttcgggtttcaccatgcaaacgtcttc |
338 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
2640 |
taaatgttgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttc |
2586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 15624 - 15570
Alignment:
| Q |
285 |
taaatgttg-acatgtaccctttttattttcgggtttcaccatgcaaacgtcttc |
338 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
15624 |
taaatgttgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttc |
15570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4400 - 4266
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggt----tgtgccaatagaattttcacaacattaagtggcctttattttatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
4400 |
ccaacaacacatttttgcagagaaata-ataatttaaacatatacaggtcaattgtgccaatagaattttcacaacattaagtagcttttattttatttt |
4302 |
T |
|
| Q |
97 |
tggtttaggattaacgaataagttgaatgattgttt |
132 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
4301 |
ttgtttacgattaatgaataagttgaatgattgttt |
4266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 4107 - 4053
Alignment:
| Q |
285 |
taaatgttg-acatgtaccctttttattttcgggtttcaccatgcaaacgtcttc |
338 |
Q |
| |
|
||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
4107 |
taaatgttgtacatgtaccctttgtatttacgggtttcaccatgcaaacctcttc |
4053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1678 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 138 - 278
Alignment:
| Q |
1 |
ccaacaacacatttttgcagagaagtatataatttaaacagatacaggt----tgtgccaatagaattttcacaacattaagtggcctttattttatttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||||||||||||| ||||||||| || | ||||||||||||| |
|
|
| T |
138 |
ccaacaacacatttttgcagagaaata-ataatttaaacagatccaggtcaattgtgccaatagaattttcgcaacattaaatgacttttattttatttt |
236 |
T |
|
| Q |
97 |
tggtttaggattaacgaataagttgaatgattgttttatcaa |
138 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
237 |
tggtttaggattaataaataagttgaatgattgtttaatcaa |
278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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