View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12128_low_8 (Length: 366)
Name: NF12128_low_8
Description: NF12128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12128_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 48308457 - 48308613
Alignment:
| Q |
15 |
cacagacctcaacagattgcttcagatcattaattatttctataaactattatcaaacacatgaattaattattctcagaccttgaataatttaaaaata |
114 |
Q |
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| T |
48308457 |
cacagacctcaacagattgcttcagatcattaattatttctataaactattatcaaacacatgaattaattcttctcagaccttgaataatttaaaaata |
48308556 |
T |
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| Q |
115 |
cttgtgatttggctcctcctcctgctcttgaaggtttaccaaactcatcattacttg |
171 |
Q |
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| T |
48308557 |
cttgtgatttggctcctcctcctgctcttgaaggtttaccaaactcatcattacttg |
48308613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 222 - 348
Target Start/End: Original strand, 48308664 - 48308790
Alignment:
| Q |
222 |
ctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcttgttacaacaacttggtagcatgtgcttgtaattcatacgtgactt |
321 |
Q |
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| T |
48308664 |
ctgttttcacgaccaaactcctacgttctttcttgataggataagacacggtcctgttacaacaacttggtagcatgtgcttgtaattcatacgtgactt |
48308763 |
T |
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| Q |
322 |
tttattatgaagtgcacaaccacattt |
348 |
Q |
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| T |
48308764 |
tttattatgaagtgcacaaccacattt |
48308790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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