View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12129_high_1 (Length: 835)

Name: NF12129_high_1
Description: NF12129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12129_high_1
NF12129_high_1
[»] chr3 (1 HSPs)
chr3 (17-824)||(34424358-34425176)


Alignment Details
Target: chr3 (Bit Score: 741; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 17 - 824
Target Start/End: Complemental strand, 34425176 - 34424358
Alignment:
Q  17 caaaaagcgtaaacatagaagaaaaaagaagcttctcgatcccgtcgccaattccgttgatccacaccgggaaactaaatcgccgatccaaaacggaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34425176 caaaaagcgtaaacatagaagaaaaaagaagcttctcgatcccgtcgccaattccgttgatccacaccgggaaactaaatcgccgatccaaaacggaata 34425077  T
Q  117 gtatgtaacggtaacggtttcggtttcgagcttgatgcgatgagatactccggtgcaggaggaagcgttgtgtgtgaggaattgagtgaaccgagtgtct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34425076 gtatgtaacggtaacggtttcggtttcgagcttgatgcgatgagatactccggtacaggaggaagcgttgtgtgtgaggaattgagtgaaccgagtgtct 34424977  T
Q  217 gttctacgtttccgacgaatgttcgttgttctgtggaagggtttaatttcggtgaattgaggcagaggaatgtcaatggtggaagttctgaggatttagt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34424976 gttctacgtttccgacgaatgttcgttgttctgtggaagggtttaatttcggtgaattgaggcagaggaatgtcaatggtggaagttctgaggatttagt 34424877  T
Q  317 tgcttcgctgattggtgatgacaatagtattggaaaggagaaggaggattgtgtcaagcaaatgagtcccatggagaaaccgaccaaaatcgagtcggaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34424876 tgcttcgctgattggtgatgacaatagtattggaaaggagaaggaggattgtgtcaagcaaatgagtcccatggagaaacctaccaaaatcgagtcggaa 34424777  T
Q  417 agggaaaggagtgttcttacgaaagcggaaaccattgaatctgtggattggaagcggattatggaagaagatcctaattgtgagtactcaattctctttg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34424776 agggaaaggagtgttcttacgaaagcggaaaccattgaatctgtggattggaagcggattatggaagaagatcctaattgtgagtactcaattctctttg 34424677  T
Q  517 ctctgctttgcatgcaacattgtcagtacttgtcagtaac-----------taatcggaaattatcttatgttaggaaatttcaacctataattcggtac 605  Q
    ||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34424676 ctctgctttgcatgcaacattgtcagtacttgtcagtaactaactaactattaatcggaaattatcttatgttaggaaatttcaacctataattcggtac 34424577  T
Q  606 gcgattaagctgattgttatttgcaatgccacttcaattatgtttaagttcacactgaatccaaattcttcgtagtttgcatgtctgttttttcttttgg 705  Q
    | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34424576 gtgattaaactgattgttatttgcaatgccacttcaattatgtttaagttcatactgaatccaaattcttcgtagtttgcatgtctgttttttcttttgg 34424477  T
Q  706 tgttctagttcatgcctgcttccaacaagctactataattctagctttgcatatgtttttatactgtatatgcttagtagttggtaatccaacgatagta 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||    
T  34424476 tgttctagttcatgcctgcttccaacaagctactataattctagctttgcatacgtttttataatgcatatgcttagtagttggtaatccaacgatagta 34424377  T
Q  806 tgacaaatttacacacagg 824  Q
    | ||||| |||||||||||    
T  34424376 ttacaaaattacacacagg 34424358  T

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