View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12129_low_10 (Length: 234)
Name: NF12129_low_10
Description: NF12129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12129_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 3456657 - 3456452
Alignment:
| Q |
19 |
aaaagtaatgttgttgttcaaaacaagagaattgaaattgaggctgagtatgatactgttgtttactggaaacaacggtcgcaagattttgaaaaacagt |
118 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3456657 |
aaaagtgatattgttgttcagaacaagagaattgaaattgaggctgagtatgatactgttgtttactggaaacaacggtcgcaagattttgaaaaacagt |
3456558 |
T |
|
| Q |
119 |
tggaagcgagtattcggagagaagatatattaaaggagaaattgcaagaaagtatagagactattgaaagacaatcatcacctgtggaggaactgtcaca |
218 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3456557 |
tggaagctagtattcggagggaggatatattaaaggagaaattgcaagaaagtatagagactattgaaagacaatcatcacctgtggaggaactgtcaca |
3456458 |
T |
|
| Q |
219 |
ggttct |
224 |
Q |
| |
|
| |||| |
|
|
| T |
3456457 |
gattct |
3456452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 3481028 - 3480839
Alignment:
| Q |
35 |
ttcaaaacaagagaattgaaattgaggctgagtatgatactgttgtttactggaaacaacggtcgcaagattttgaaaaacagttggaagcgagtattcg |
134 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||| || || || || |||| ||||||||| || ||| | | |
|
|
| T |
3481028 |
ttcaaaacaaaagagttgaaattgaggctgagtatgattccgttgtttactggaaacatcgagcgatcgaattggaaagacagttggaggcaagttatag |
3480929 |
T |
|
| Q |
135 |
gagagaagatatattaaaggagaaattgcaagaaagtatagagactattgaaagacaatcatcacctgtggaggaactgtcacaggttct |
224 |
Q |
| |
|
|||||| || ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3480928 |
gagagaggagatattaaaggaaaagctgcaagaaagtatagaggctattcaaagacaatcatcacctgtggaggaactgtcacagattct |
3480839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 48694156 - 48694229
Alignment:
| Q |
19 |
aaaagtaatgttgttgttcaaaacaagagaattgaaattgaggctgagtatgatactgttgtttactggaaaca |
92 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
48694156 |
aaaagtaatgttgttgtacaaaataagagagttgaaattgatgccgagtatgatactgttgtgtactggaaaca |
48694229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University