View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12129_low_12 (Length: 211)

Name: NF12129_low_12
Description: NF12129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12129_low_12
NF12129_low_12
[»] chr5 (10 HSPs)
chr5 (78-196)||(30478867-30478986)
chr5 (78-196)||(30681472-30681590)
chr5 (79-196)||(30745408-30745525)
chr5 (19-79)||(30478713-30478773)
chr5 (79-196)||(30055636-30055753)
chr5 (34-79)||(30681684-30681729)
chr5 (34-79)||(30717941-30717986)
chr5 (34-79)||(30745269-30745314)
chr5 (43-79)||(30055505-30055541)
chr5 (78-107)||(30717810-30717839)
[»] chr4 (1 HSPs)
chr4 (78-177)||(20303508-20303603)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 30478867 - 30478986
Alignment:
Q  78 ttaaggatcattcatgtgtgctgatgataatgaactcaagttggttgagacttcatctgttgc-nnnnnnnccggacaactgttgcaccggactattcat 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||    
T  30478867 ttaaggatcattcatgtgtgctgatgataatgaactcaagttggctgagacttcatctgttgctttttttttcggacaactgttgcaccggactattcat 30478966  T
Q  177 tactcctcaagtcctctgtg 196  Q
    ||||||||||||||||||||    
T  30478967 tactcctcaagtcctctgtg 30478986  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 30681590 - 30681472
Alignment:
Q  78 ttaaggatcattcatgtgtgctgatgataatgaactcaagttggttgagacttcatctgttgcnnnnnnnccggacaactgttgcaccggactattcatt 177  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        || || |||||||||||||||||||||||    
T  30681590 ttaaggatcattcatgtgtgctgatgataatgaactcaagtttgttgagacttcatctgttgcttttttt-cgcacgactgttgcaccggactattcatt 30681492  T
Q  178 -actcctcaagtcctctgtg 196  Q
     ||||||||| |||| ||||    
T  30681491 aactcctcaaatcctttgtg 30681472  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 30745408 - 30745525
Alignment:
Q  79 taaggatcattcatgtgtgctgatgataatgaactcaagttggttgagacttcatctgttgcnnnnnnnccggacaactgttgcaccggactattcatt- 177  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||        || || |||||||||||||||||||||||     
T  30745408 taaggatcattcatgtgtactgatgataatgaactcaagtttgttgagacttcatctgttgcttttttt-cgcacgactgttgcaccggactattcatta 30745506  T
Q  178 actcctcaagtcctctgtg 196  Q
    |||||||||||||| ||||    
T  30745507 actcctcaagtcctttgtg 30745525  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 30478713 - 30478773
Alignment:
Q  19 attattgtcatgaattattcatagcaagttcatttactgaacagataagaaacaagaattt 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30478713 attattgtcatgaattattcatagcaagttcatttactgaacagataagaaacaagaattt 30478773  T

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Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 30055636 - 30055753
Alignment:
Q  79 taaggatcattcatgtgtgctgatgataatgaactcaagttggttgagacttcatctgttgcnnnnnnnccggacaactgttgcaccggactattcatt- 177  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||        || || |||||||||||||||||||||||     
T  30055636 taaggatcattcatgtgtgctgatgataatgaactcaaatttgttgagacttcatctgttgcttttttt-cgcacgactgttgcaccggactattcatta 30055734  T
Q  178 actcctcaagtcctctgtg 196  Q
    ||| |||||||||| ||||    
T  30055735 acttctcaagtcctttgtg 30055753  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 30681729 - 30681684
Alignment:
Q  34 tattcatagcaagttcatttactgaacagataagaaacaagaattt 79  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||    
T  30681729 tatttataacaagttcacttactgaacagataagaaacaagaattt 30681684  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 30717986 - 30717941
Alignment:
Q  34 tattcatagcaagttcatttactgaacagataagaaacaagaattt 79  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||    
T  30717986 tatttataacaagttcacttactgaacagataagaaacaagaattt 30717941  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 30745269 - 30745314
Alignment:
Q  34 tattcatagcaagttcatttactgaacagataagaaacaagaattt 79  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||    
T  30745269 tatttataacaagttcacttactgaacagataagaaacaagaattt 30745314  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 30055505 - 30055541
Alignment:
Q  43 caagttcatttactgaacagataagaaacaagaattt 79  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30055505 caagttcacttactgaacagataagaaacaagaattt 30055541  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 30717839 - 30717810
Alignment:
Q  78 ttaaggatcattcatgtgtgctgatgataa 107  Q
    ||||||||||||||||||||||||||||||    
T  30717839 ttaaggatcattcatgtgtgctgatgataa 30717810  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 20303603 - 20303508
Alignment:
Q  78 ttaaggatcattcatgtgtgctgatgataatgaactcaagttggttgagacttcatctgttgcnnnnnnnccggacaactgttgcaccggactattcatt 177  Q
    |||||||||||||||||||| |||||||   |||||||||||||||||||| ||||| |||||       |||  |||||||||||||||||||||||||    
T  20303603 ttaaggatcattcatgtgtgatgatgat---gaactcaagttggttgagacatcatcagttgc-ttttttccgtgcaactgttgcaccggactattcatt 20303508  T

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