View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12129_low_2 (Length: 628)
Name: NF12129_low_2
Description: NF12129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12129_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 25 - 608
Target Start/End: Original strand, 1294656 - 1295222
Alignment:
| Q |
25 |
tgaattgaagctttgtaactagtgtagtagtgtttggtgtaatcatgtgtgatcattttgttgactgtaacttggcaaacaatgaccccattagtcattc |
124 |
Q |
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| T |
1294656 |
tgaattgaagctttgtaactagtgtagtagtgtttggtgtaatcatgtgtgatcattttgttgactgtaacttggcaaacaatgaccccattagtcattc |
1294755 |
T |
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| Q |
125 |
gattggaattaccccggctcttcggattgatattttggctcaatttgagttacaggcatcaaatgacagttttttactttgaggttcttttgtgcagaag |
224 |
Q |
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| T |
1294756 |
gattggaattaccccg----tttggc--gcaattt--gatcaatttgaattacaggcatcaaatgacagttttttactttgaggttgttttgtgcagaag |
1294847 |
T |
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| Q |
225 |
gcattaaatggtgtttttgggatttaaatcgcagttttgctctttgatgaggtgggatggtatcataactatagctcgggttggttttgagtagattctg |
324 |
Q |
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| T |
1294848 |
gcatcaaatggtgtttttgggatttaaatcgcagttttgctctttcatgaggtaggatggtatcataactatagctcgggttggttttgagtagattctg |
1294947 |
T |
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| Q |
325 |
atgcgatacttcaaggaggatgcatgttatttaaacaactgctcctattttgttgtctaacaacgtatatacaattttgttttcatatggatgtcaaata |
424 |
Q |
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| T |
1294948 |
atgcgatacttcaa-gaggatgcatgtgatttaaacaactgctcctattttgtt--------acatatatacaattttgtttttatatgggtgtcaaata |
1295038 |
T |
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| Q |
425 |
tgttgtcgatttttatttgttcaaataacattcctctccgaggaggcatgccggatcatcatttcgagagcaattgtggtctggatcatactttgtttgt |
524 |
Q |
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| T |
1295039 |
tgttgtcgatttttatttgttcaaataacattcctccccaaggaggcatgccggatcatcattttgaaagctattgtggtgtggatcatactttgtttgt |
1295138 |
T |
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| Q |
525 |
ctttcgaaactgtggtggtaggattctttatgccgtagtacaggactgatgtttgattagggtgtgtgtattgcttgtaatgtt |
608 |
Q |
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| T |
1295139 |
ctttcaaaactgtggtggtaggattctttatgccttagtacaggactgatgtttgattagggtgtgtgtattgcttgtaatgtt |
1295222 |
T |
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