View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12129_low_3 (Length: 558)
Name: NF12129_low_3
Description: NF12129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12129_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 102 - 548
Target Start/End: Original strand, 33589157 - 33589603
Alignment:
| Q |
102 |
gtgataaccctaatcacccactttatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33589157 |
gtgataaccctaatcacccactttatagaggagttagaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctg |
33589256 |
T |
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| Q |
202 |
gcttggaacgtatgctacggctgaaatggcggcgcgtgcacacgacgtggctgcacttaccttaaaaggctcatcggcaatccttaacttccctgaactt |
301 |
Q |
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| T |
33589257 |
gcttggaacatatgctacggctgaaatggcggcgcgtgcacacgacgtggctgcacttaccttaaaaggctcatcggcaatccttaacttccctgaactt |
33589356 |
T |
|
| Q |
302 |
tcagcttcacttcctcaaccagcttctaacttgccaagagatattcaagccgcagccgccaaagccgcttccatggttgctccgcctccttctccaatgc |
401 |
Q |
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| T |
33589357 |
tcagcttcacttcctcaaccaacttctaactcgccaagagatattcaagccgcggccgccaaagccgcttccatggttgctccacctccttctccgatgc |
33589456 |
T |
|
| Q |
402 |
caacatcttcttcttcttcaactccatatgatcttggtgagattgttgaactaccacaacttgaaacatattttgagccacccgacccgaacaacgagtt |
501 |
Q |
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| T |
33589457 |
caacatcttcttcttcttcaactccatatgatcttggtgagattgttgaactaccacaacttgaaacatattttgagtcacccgtgccgaacaacgagtt |
33589556 |
T |
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| Q |
502 |
tgtgtttttggacccggttgattattctcagtcatggtatcatagca |
548 |
Q |
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| T |
33589557 |
tgtgtttttggacccggttgattattctcagtcatggtatcatagca |
33589603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 106 - 396
Target Start/End: Original strand, 33602280 - 33602570
Alignment:
| Q |
106 |
taaccctaatcacccactttatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggctt |
205 |
Q |
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|||| |||| || ||| |||||||||| || |||||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||| |
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| T |
33602280 |
taacactaagcatccagtttatagaggtgtaagaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggcta |
33602379 |
T |
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| Q |
206 |
ggaacgtatgctacggctgaaatggcggcgcgtgcacacgacgtggctgcacttaccttaaaaggctcatcggcaatccttaacttccctgaactttcag |
305 |
Q |
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| T |
33602380 |
ggaacattcgcaaccgctgaaatggcagcccgtgcacacgatgcagctgcacttactataaaaggttcatctgcaatccttaacttccccgaactttcag |
33602479 |
T |
|
| Q |
306 |
cttcacttcctcaaccagcttctaacttgccaagagatattcaagccgcagccgccaaagccgcttccatggttgctccgcctccttctcc |
396 |
Q |
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| T |
33602480 |
ctacacttccaagaccagcttccaactctccaagagatgttcaagctgccgcagttaaagccgcgtctatggttcctcctcctcctcctcc |
33602570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 43290111 - 43289982
Alignment:
| Q |
123 |
tttatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacgtatgctacggc |
222 |
Q |
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|||| ||||||||| ||||||| | ||||||||||||||||| |||||||| ||||| ||||||| | ||| |||||||| ||||||| ||| ||| | |
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| T |
43290111 |
tttacagaggagttcgaatgcgggcttggggaaaatgggtatccgaaatccgcgaaccgagaaagaagaatcggatctggctcggaacgtttgccacgcc |
43290012 |
T |
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| Q |
223 |
tgaaatggcggcgcgtgcacacgacgtggc |
252 |
Q |
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| T |
43290011 |
ggagatggcagcacgagcacatgacgtggc |
43289982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 43561927 - 43561834
Alignment:
| Q |
138 |
gaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacgtatgctacggctgaaatggc |
231 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||| || || ||| ||||||||||||||||| || ||||| |||||||||| |
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| T |
43561927 |
gaatgcgaagctggggaaaatgggtatcggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggc |
43561834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 16357950 - 16357844
Alignment:
| Q |
125 |
tatagaggagttagaatgcgaacatggggaaaatgggtatcggaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacgtatgctacggctg |
224 |
Q |
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|||||||| || |||||| || ||||||||||||||||||| ||||| ||||| ||| ||||||| |||| ||||||||||| || |||| |||| |
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| T |
16357950 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
16357851 |
T |
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| Q |
225 |
aaatggc |
231 |
Q |
| |
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||||||| |
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| T |
16357850 |
aaatggc |
16357844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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