View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12129_low_4 (Length: 468)
Name: NF12129_low_4
Description: NF12129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12129_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 135 - 451
Target Start/End: Original strand, 12681502 - 12681813
Alignment:
| Q |
135 |
cactgcagaggaaaaagcgtaatgccgaaaaggcccaacaaagggctctctataaggcacaaaaagaagctgagcaaaaagagaaggtaataacattatg |
234 |
Q |
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| T |
12681502 |
cactgcagaggaaaaagcgtaatgccgaaaaggcccaacaaagggctctctataaggcacaaaaagaagctgagcaaaaagagaaggtaataacattatg |
12681601 |
T |
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| Q |
235 |
agttagactcttaaaatgattagtttaattacgcatgtaatcacattacattatgatttccgtttgtcataatgtgattaaatgtttctaaatgtctatc |
334 |
Q |
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| T |
12681602 |
agttaaactcgtaaaatgattagtttaattacgcatgtaatcacattacattatgatttccgtttgtc-----gtgattaaatgtttctaaatgtctatc |
12681696 |
T |
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| Q |
335 |
ccattaaattaaatgtgattaattgaccatggtaaatattttttatactgcagagtgaatagtcaataagcttaaactaaaattcatttaccggtagttc |
434 |
Q |
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| T |
12681697 |
ccattaaattaaatgtgattaattgaccatggtaaatattttttatactgcagagtgaatagtcaataagcttaaactaaaattcatttaccggtagttc |
12681796 |
T |
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| Q |
435 |
ttcagctatataatata |
451 |
Q |
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| T |
12681797 |
ttcagctatataatata |
12681813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 12681378 - 12681431
Alignment:
| Q |
11 |
gaacctgtgagaacaaaggaggaagacgagcagatcttaaaggctgaacaggcg |
64 |
Q |
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| T |
12681378 |
gaacctgtgagaacaaaggaggaagacgagcagatcttaaaggctgaacaggcg |
12681431 |
T |
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