View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12130_low_1 (Length: 397)
Name: NF12130_low_1
Description: NF12130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12130_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 32275326 - 32275452
Alignment:
| Q |
10 |
gcagagatatattcacctcctgtttaccgattccacccatgcccaaggttacagccttgacggtcaatgcacaccttgcctccaacggtgttgtgttctc |
109 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
32275326 |
gcagagatagattcactacctgtttaccgattccacccatgcccaagcttgcagccttgacggtcattgcacaccttgcctccaacggtgttgggttctc |
32275425 |
T |
|
| Q |
110 |
cttgtcgtgaggatcctccatacttga |
136 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
32275426 |
cttgtcgtgaggctcctccatacttga |
32275452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 32809087 - 32809244
Alignment:
| Q |
28 |
cctgtttaccgattccacccatgcccaaggttacagccttgacggtcaatgcacaccttgcctccaacggtgttgtgttctccttgtcgtgaggatcctc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
32809087 |
cctgtttaccgattccacccatgcccaaggttgcagcctt---------tgcacaccttgcctccaacggtgttgtggtctccttgtcgtgaggctcctc |
32809177 |
T |
|
| Q |
128 |
catacttgagnnnnnnngttgaagcaaaataacttgaccatgtgagtctctcacattgtggcatatat |
195 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32809178 |
catacttgag-aaaaaggttgaagcaaaataacttgaccatgtgagtctctcacattgtggtatatat |
32809244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 32269036 - 32269144
Alignment:
| Q |
28 |
cctgtttaccgattccacccatgcccaaggttacagccttgacggtcaatgcacaccttgcctccaacggtgttgtgttctccttgtcgtgaggatcctc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
32269036 |
cctgtttaccgattccacccatgcccaaggttgcaaccttgacggtcattgcacac-ttgcctccaacggtgttgtgttctctttgtcgtgaggctcctc |
32269134 |
T |
|
| Q |
128 |
catacttgag |
137 |
Q |
| |
|
|||||||||| |
|
|
| T |
32269135 |
catacttgag |
32269144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 32269293 - 32269349
Alignment:
| Q |
325 |
ttttgtttgtgagtaagggaatgagtgaaagaaaaccggaagttagtggaaggttac |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
32269293 |
ttttgtttgtgagtaagggaatgagtgaaagaaaattggaagtgagtgcaaggttac |
32269349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 32809354 - 32809396
Alignment:
| Q |
325 |
ttttgtttgtgagtaagggaatgagtgaaagaaaaccggaagt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32809354 |
ttttgtttgtgagtaagggaatgagtgaaagaaaactggaagt |
32809396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 32809241 - 32809277
Alignment:
| Q |
205 |
atatatttgtaagattggtgagaggcagataaatgat |
241 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32809241 |
atatatttgtaagattggtgagagggagataaatgat |
32809277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 32269167 - 32269212
Alignment:
| Q |
196 |
cacatgggaatatatttgtaagattggtgagaggcagataaatgat |
241 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
32269167 |
cacatgggtataaatttgtaagactggtgagagggagataaatgat |
32269212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University