View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12130_low_3 (Length: 204)
Name: NF12130_low_3
Description: NF12130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12130_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 42687751 - 42687603
Alignment:
| Q |
19 |
ctgaggacttcaagtgaccaaaattttcatctcttggaacatatatttctgtagctggtttctcagaatttggatctgttcgaaataagacaaaagcaag |
118 |
Q |
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| T |
42687751 |
ctgaggacttcaagtgaccaaaattttcatctcttggaacatatatttctgtagctggtttctcagaatttggatctgttcgaaataagacaaaagcaag |
42687652 |
T |
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| Q |
119 |
acacatatgttattagggaaacaaatttgaaaatgacaacttagtcatc |
167 |
Q |
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| T |
42687651 |
acacatatgttattaggaaaacaaatttgaaaatgacaacttagtcatc |
42687603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 6451900 - 6451942
Alignment:
| Q |
19 |
ctgaggacttcaagtgaccaaaattttcatctcttggaacata |
61 |
Q |
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| T |
6451900 |
ctgatgacttcaagtgaccaaaattttcatctcttggaacata |
6451942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 6457990 - 6458032
Alignment:
| Q |
19 |
ctgaggacttcaagtgaccaaaattttcatctcttggaacata |
61 |
Q |
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| T |
6457990 |
ctgatgacttcaagtgaccaaaattttcatctcttggaacata |
6458032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 9603431 - 9603394
Alignment:
| Q |
24 |
gacttcaagtgaccaaaattttcatctcttggaacata |
61 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
9603431 |
gacttcaagtgtccaaaattttcatctcttggaacata |
9603394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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