View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12131_low_2 (Length: 489)
Name: NF12131_low_2
Description: NF12131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12131_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Complemental strand, 37720483 - 37720020
Alignment:
| Q |
17 |
cagttagtgcaatagtgcttatgttaatagatatggttaaataagttgattcaaatatgccctaaaactcatatgaacagtgnnnnnnnnnnnnnnnn-- |
114 |
Q |
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| T |
37720483 |
cagttagtgcaatagtgcttatgttaatagatatggttaaataagttgattcaaatatgccctaaaactcatatgaacagtgtatttttttttttttttt |
37720384 |
T |
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| Q |
115 |
----gcacatgtatctaatattatcttgccatttagatatgtgtgaaaatgcttcaataagtgatataataaagtggaattatggtaaaatatgactgga |
210 |
Q |
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| T |
37720383 |
ttttgcacatgtatctaatattatcttgccatttagatatgtgtgaaaatgcttcaataagtgatataataaagtggaattatggtaaaatatgactgga |
37720284 |
T |
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| Q |
211 |
tttttaatttgcaggcacttccactttacctggataaaatctttcaccctgttgtagcagtgttgttatcagtaacttttgttctggctttcggagaggt |
310 |
Q |
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| T |
37720283 |
tttttaatttgcaggcacttccactttacctggataaaatcttccaccctgttgtagcagtgttgttatcagtaacttttgttctggctttcggagaggt |
37720184 |
T |
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| Q |
311 |
acattatgtttctagttgagtttgcttgcatcataatcaattaggacattgcactgactgttatcttgtcacatgggattattaggtcattccgcaagct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37720183 |
acattatgtttctagttgagtttgcttgcatcataatcaagtaggacattgcactgactgttatcttgtcacatgggattattaggtcattccgcaagct |
37720084 |
T |
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| Q |
411 |
atatgtacaaaacatggactctatgttggagctagttttattgggcttgtacgcttcctgatgt |
474 |
Q |
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| T |
37720083 |
atatgtacaaaacatggactctatgttggagctagttttattgggcttgtacgcttcctgatgt |
37720020 |
T |
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