View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12131_low_3 (Length: 462)
Name: NF12131_low_3
Description: NF12131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12131_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 21 - 449
Target Start/End: Original strand, 88726 - 89154
Alignment:
| Q |
21 |
ttaccatcttggctttccgaagaagatcttgattattatgttactaaattcaacaaaactggcttcactggagggttgaactactatagaaatttgagct |
120 |
Q |
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| T |
88726 |
ttaccatcttggctttccgaagaagatcttgattattatgttactaaattcaacaaaactggcttcactggagggttgaactactatagaaatttgagct |
88825 |
T |
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| Q |
121 |
tgtaagtgttcatttttgttgttgtcactatattttccaaaattcataaaaataagatgtcaaaagtcatagaagtatagaacttcacctcttttcacta |
220 |
Q |
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| T |
88826 |
tgtaagtgttcatttttgttgttgtcactatattttcgaaaattcataaaaataaggtgtcaaaagtcatagaagtatagaacttcacctcttttcacta |
88925 |
T |
|
| Q |
221 |
actgataatggttactttgcaggaactgggagctaacatcaccatggagtgaagtaggagtggtgaatgtaccggtgaagtacattacaggtgattgtgg |
320 |
Q |
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| T |
88926 |
gctgataatggttactttgcaggaactgggagctaacatcaccatggagtgaagtaggagtggtgaatgtaccggtgaagtacattacaggtgattgtgg |
89025 |
T |
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| Q |
321 |
tttggtatacactacgccgagtatgaaggaatatatcctcgatggtggtttcaagaaagatgttccaggtttggaggaagttgttgtgcaggaagggata |
420 |
Q |
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| T |
89026 |
tttggtatacactacgccgagtatgaaggaatatatcctcgatggtggtttcaagaaagatgttccaggtttggaggaagtggttgtgcaggaagggata |
89125 |
T |
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| Q |
421 |
gcacacttcaacaaccaagaagcagcaca |
449 |
Q |
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| T |
89126 |
gcacacttcaacaaccaagaagcagcaca |
89154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 46475915 - 46475835
Alignment:
| Q |
363 |
tggtggtttcaagaaagatgttccaggtttggaggaagttgttgtgcaggaagggatagcacacttcaacaaccaagaagc |
443 |
Q |
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| T |
46475915 |
tggtggtttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggctcactttaacaaccaagaagc |
46475835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 46492814 - 46492734
Alignment:
| Q |
363 |
tggtggtttcaagaaagatgttccaggtttggaggaagttgttgtgcaggaagggatagcacacttcaacaaccaagaagc |
443 |
Q |
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| T |
46492814 |
tggtggcttcaagaaagatgtgcccaatttggaggaagttgttatacaggaaggtgtggctcacttcaacaaccaagaagc |
46492734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 46328183 - 46328269
Alignment:
| Q |
39 |
gaagaagatcttgattattatgttactaaattcaacaaaactggcttcactggagggttgaactactatagaaatttgagcttgtaa |
125 |
Q |
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| T |
46328183 |
gaagatgatcttgcttattttgtttctaaatttgagaaaacaggctttactggaggattgaactactatagaaactttaacttgtaa |
46328269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 46530692 - 46530601
Alignment:
| Q |
21 |
ttaccatcttggctttccgaagaagatcttgattattatgttactaaattcaacaaaactggcttcactggagggttgaactactatagaaa |
112 |
Q |
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||||| ||||||||| | |||||||| |||| ||||| ||| | ||||| | ||||| ||||||||||||| ||||||||||||||||| |
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| T |
46530692 |
ttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgagaaaacaggcttcactggagcattgaactactatagaaa |
46530601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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