View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12131_low_4 (Length: 371)
Name: NF12131_low_4
Description: NF12131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12131_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 37 - 353
Target Start/End: Complemental strand, 4306088 - 4305772
Alignment:
| Q |
37 |
agaatttgtagcaagaaatgaagagtaagcatagttgttattgtggttttgtgaagtactagtaattcctttagtggaaaagtccatgatgtctttggct |
136 |
Q |
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| T |
4306088 |
agaatttctagcaagaaatgaagagtaagcatagttgttattgtggtgttgtgaagtactagtaattcctttagtggaaaagtccatgatgtctttggct |
4305989 |
T |
|
| Q |
137 |
ttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcatta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4305988 |
ttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcatta |
4305889 |
T |
|
| Q |
237 |
cactgtaataaaacaactttaacaattaacttaatgcaaattgaccatgttatatactactggtatgaattaatgaacttgttaagttaagtagaaaaaa |
336 |
Q |
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| T |
4305888 |
cactgtaataaaacaactttaacaattaacttaatgcaaattgaccatgttatatactactggtatgaattaatgaacttgttaagttaagtagaaaaaa |
4305789 |
T |
|
| Q |
337 |
gaacatgtttgtacctg |
353 |
Q |
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||||||||||| ||||| |
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| T |
4305788 |
gaacatgtttgcacctg |
4305772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 37 - 307
Target Start/End: Complemental strand, 4311445 - 4311172
Alignment:
| Q |
37 |
agaatttgtagcaagaaatgaagagtaagcatagttgttattgtggttttgtgaagtactagtaattcctttagtggaaaagtccatgatgtctttggct |
136 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |
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| T |
4311445 |
agaatttctagaaagaaatgaagagtaagcatagttgttattgtggttttgtgaagtactagcaattcctttggtggaaaagtccatgatgtctttagct |
4311346 |
T |
|
| Q |
137 |
ttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctcttccttcttaatattagccttcatta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
4311345 |
ttatcagctggaacatcatcaaacacaattactttcccatcataaaagattgtcatttgtgcacaactaggctcctccttcttaatattagccttcatta |
4311246 |
T |
|
| Q |
237 |
cactgtaata---aaacaactttaacaattaacttaatgcaaattgaccatgttatatactactggtatgaatt |
307 |
Q |
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| T |
4311245 |
cactgtaataattaaacaacattaacaattaatttaatgcaaattgaccatgctatatacttctagtatgaatt |
4311172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 112 - 290
Target Start/End: Complemental strand, 4300952 - 4300774
Alignment:
| Q |
112 |
ggaaaagtccatgatgtctttggctttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtcatttgtgcacatttaggctct |
211 |
Q |
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||||||| |||||||||| | | |||| |||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| | ||||||||||||| |
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| T |
4300952 |
ggaaaagaccatgatgtcctcgactttttcagctggaatatcatcaaacacaattattttcccatcataaaaaattgtcatttgggtacatttaggctct |
4300853 |
T |
|
| Q |
212 |
tccttcttaatattagccttcattacactgtaataaaacaactttaacaattaacttaatgcaaattgaccatgttata |
290 |
Q |
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| T |
4300852 |
tccttgataatattagccttcattacactgtaataaaacaacattaacaattaatttaatgcaaattgaccatgttata |
4300774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 4294430 - 4294311
Alignment:
| Q |
97 |
agtaattcctttagtggaaaagtccatgatgtctttggctttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtcatttgt |
196 |
Q |
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|||| ||||||| ||| ||||| |||||||| | ||| |||| |||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
4294430 |
agtagttcctttggtgcaaaagaccatgatgcccttgactttttcagctggaatatcatcaaacacaattactttcccatcataaaaaattgtcatttgt |
4294331 |
T |
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| Q |
197 |
gcacatttaggctcttcctt |
216 |
Q |
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|||||| ||||||||||||| |
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| T |
4294330 |
gcacatctaggctcttcctt |
4294311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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