View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12132_high_1 (Length: 350)

Name: NF12132_high_1
Description: NF12132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12132_high_1
NF12132_high_1
[»] chr3 (3 HSPs)
chr3 (99-344)||(18757963-18758208)
chr3 (137-183)||(38287083-38287129)
chr3 (158-206)||(4609908-4609956)
[»] chr1 (2 HSPs)
chr1 (98-344)||(10983515-10983761)
chr1 (98-217)||(20265900-20266019)
[»] chr2 (5 HSPs)
chr2 (17-97)||(29548808-29548888)
chr2 (137-239)||(25818599-25818701)
chr2 (98-224)||(28668063-28668189)
chr2 (99-218)||(21601920-21602039)
chr2 (137-238)||(22567956-22568057)
[»] chr6 (5 HSPs)
chr6 (138-239)||(16318884-16318984)
chr6 (99-224)||(15360923-15361048)
chr6 (137-243)||(8550484-8550590)
chr6 (137-181)||(13055008-13055052)
chr6 (279-335)||(16318801-16318856)
[»] chr8 (4 HSPs)
chr8 (97-224)||(3735705-3735832)
chr8 (98-224)||(3735445-3735571)
chr8 (99-218)||(25760200-25760318)
chr8 (137-181)||(28160792-28160836)
[»] chr5 (2 HSPs)
chr5 (137-243)||(20756880-20756986)
chr5 (20-61)||(43558050-43558091)
[»] chr7 (3 HSPs)
chr7 (98-224)||(2750524-2750650)
chr7 (138-239)||(23066791-23066892)
chr7 (143-211)||(11221450-11221518)
[»] scaffold0576 (1 HSPs)
scaffold0576 (99-224)||(5907-6032)
[»] chr4 (3 HSPs)
chr4 (98-218)||(16705877-16705997)
chr4 (137-224)||(18204749-18204836)
chr4 (143-237)||(21654836-21654930)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 99 - 344
Target Start/End: Original strand, 18757963 - 18758208
Alignment:
Q  99 actacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaat 198  Q
    |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  18757963 actacgccaaaaaagggatttaatagcactttttttgccctttgatagcactaaaaagtgctattaaagccgccactattgtaagtataccgtttttaat 18758062  T
Q  199 agcacttttaaagggctattaaaagtctggtgtttaatagcatttacatgaaaagtgcttttgtagtatgcatttttacgctttggaataagtattttga 298  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18758063 agcacttttaaagggctattaaaagcctggtgtttaatagcattttcatgaaaagtgctattgtagtatgcatttttacgctttggaataagtattttga 18758162  T
Q  299 atagaatttaatagcactttcattttaaagtgctaactgatgatgt 344  Q
    |||||||||||||||||||||||||||||||||||||  |||||||    
T  18758163 atagaatttaatagcactttcattttaaagtgctaacatatgatgt 18758208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 38287129 - 38287083
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgtaag 183  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||    
T  38287129 cctttaatagcactcaaaagtgctattaaagcccccgctattgtaag 38287083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 4609956 - 4609908
Alignment:
Q  158 gctattaaagccgccgctattgtaagtatatcgattttaatagcacttt 206  Q
    |||||||||| ||| |||||||||||||||||   ||||||||||||||    
T  4609956 gctattaaagtcgcagctattgtaagtatatcatctttaatagcacttt 4609908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 98 - 344
Target Start/End: Complemental strand, 10983761 - 10983515
Alignment:
Q  98 cactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaa 197  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||    
T  10983761 cactacgccaaaaaagggatttaatagcactttttttgccctttgatagcactaaaatgtgctattaaagccgccgctattgtaagtatactgtttttaa 10983662  T
Q  198 tagcacttttaaagggctattaaaagtctggtgtttaatagcatttacatgaaaagtgcttttgtagtatgcatttttacgctttggaataagtattttg 297  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10983661 tagcacttttaaagggctattaaaagcctggtgtttaatagcattttcatgaaaagtgctattgtagtatgcatttttacgctttggaataagtattttg 10983562  T
Q  298 aatagaatttaatagcactttcattttaaagtgctaactgatgatgt 344  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||    
T  10983561 aatagaatttaatagcactttcattttaaagtgctaacatatgatgt 10983515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 20266019 - 20265900
Alignment:
Q  98 cactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaa 197  Q
    ||||||||||||||||||||||||||||||         ||||| |||||||| |||||||||||| ||||| ||||||||||||| |||  |  | | |    
T  20266019 cactacgccaaaaaagggatttaatagcacttttttttgcctttaatagcacttaaaagtgctattgaagcccccgctattgtaagcatactgcctatga 20265920  T
Q  198 tagcacttttaaagggctat 217  Q
    |||||||||||||| |||||    
T  20265919 tagcacttttaaagtgctat 20265900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 29548888 - 29548808
Alignment:
Q  17 attgaaaagatggtgggaattaagcttaggtagtttgggcatataaatttgtggtaaggatagtagatcaaatggagggta 97  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29548888 attgaaaagatggtgggaattaagcttaggttgtttgggcatataaatttgtggtaaggatagtagatcaaatggagggta 29548808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 25818701 - 25818599
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaat 236  Q
    ||||| |||||||| |||||||||||||||  |||||||||||||| | ||||   ||||||| ||||||||||| ||||||||||| ||||| ||||||    
T  25818701 cctttaatagcacttaaaagtgctattaaacacgccgctattgtaaatgtatcctctttaataacacttttaaagtgctattaaaagcctggtttttaat 25818602  T
Q  237 agc 239  Q
    |||    
T  25818601 agc 25818599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 28668189 - 28668063
Alignment:
Q  98 cactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaa 197  Q
    |||||||||||||||||||||||||| |||         ||||| |||||||| |||||||||||| ||||| ||||||||||||| |||  |  | | |    
T  28668189 cactacgccaaaaaagggatttaatatcacttttttttgcctttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatactgcctatga 28668090  T
Q  198 tagcacttttaaagggctattaaaagt 224  Q
    |||||||||||||| ||||||||||||    
T  28668089 tagcacttttaaagtgctattaaaagt 28668063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 21602039 - 21601920
Alignment:
Q  99 actacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaat 198  Q
    ||||| |||||||||||||||||||||||       | ||||  |||||||| ||||||||||||||| || ||||||||||||||| | |  || ||||    
T  21602039 actacaccaaaaaagggatttaatagcactttttttgaccttcaatagcacttaaaagtgctattaaatcccccgctattgtaagtacagcacttataat 21601940  T
Q  199 agcacttttaaagggctatt 218  Q
    ||||| ||||||| ||||||    
T  21601939 agcacatttaaagcgctatt 21601920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 22568057 - 22567956
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaat 236  Q
    ||||| |||||||| |||||| || |||||  | ||||||||||||||  |||   ||||||||| ||||||||| ||||||||||| ||||| ||||||    
T  22568057 cctttaatagcacttaaaagttcttttaaatgcaccgctattgtaagtgcatcctctttaatagctcttttaaagagctattaaaagcctggtttttaat 22567958  T
Q  237 ag 238  Q
    ||    
T  22567957 ag 22567956  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 16318984 - 16318884
Alignment:
Q  138 ctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaata 237  Q
    |||| ||||||||||||| | ||||||||| ||||||||||||||||||| | || || |||||||||||| |||||||||||||||||||| |||||||    
T  16318984 ctttaatagcactaaaaactactattaaagtcgccgctattgtaagtatagc-atctttatagcacttttagagggctattaaaagtctggtatttaata 16318886  T
Q  238 gc 239  Q
    ||    
T  16318885 gc 16318884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 15361048 - 15360923
Alignment:
Q  99 actacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaat 198  Q
    |||||||||||||||||||||||||||||         | ||| |||||||| |||||||||||| ||||| ||||||||||||| |||     ||| ||    
T  15361048 actacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttgat 15360949  T
Q  199 agcacttttaaagggctattaaaagt 224  Q
    ||||||||||||| ||||||||||||    
T  15360948 agcacttttaaagtgctattaaaagt 15360923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 8550484 - 8550590
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaat 236  Q
    ||||| |||| ||| |||||  ||||||||  ||||||||||||||||  |||   ||||||||||||||||||| | ||||||||| ||| | ||||||    
T  8550484 cctttaatagaacttaaaagctctattaaacgcgccgctattgtaagtggatcctctttaatagcacttttaaagtgttattaaaagcctgatttttaat 8550583  T
Q  237 agcattt 243  Q
    |||||||    
T  8550584 agcattt 8550590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 13055008 - 13055052
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgta 181  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||    
T  13055008 cctttaatagcacttaaaagtgctattaaagcccccgctattgta 13055052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 16318856 - 16318801
Alignment:
Q  279 ctttggaataagtattttgaatagaatttaatagcactttcattttaaagtgctaac 335  Q
    ||||| |||| ||||||||||||| ||||| |||||||||| |||||||||||||||    
T  16318856 ctttgaaataggtattttgaataggatttattagcactttc-ttttaaagtgctaac 16318801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 3735832 - 3735705
Alignment:
Q  97 acactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgatttta 196  Q
    |||||||||||||||||||||||||||||||         | ||| |||||||| |||||||||||| ||||| ||||||||||||| |||     |||     
T  3735832 acactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttg 3735733  T
Q  197 atagcacttttaaagggctattaaaagt 224  Q
    ||||||||||||||| ||||||||||||    
T  3735732 atagcacttttaaagtgctattaaaagt 3735705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 3735571 - 3735445
Alignment:
Q  98 cactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaa 197  Q
    ||||||||||||||||||||||||||||||         | ||| |||||||| |||||||||||| ||||| ||||||||||||| |||     ||| |    
T  3735571 cactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttga 3735472  T
Q  198 tagcacttttaaagggctattaaaagt 224  Q
    |||||||||||||| ||||||||||||    
T  3735471 tagcacttttaaagtgctattaaaagt 3735445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 25760200 - 25760318
Alignment:
Q  99 actacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaat 198  Q
    ||||| |||||||||||||||||||||||       | ||||  |||||||| ||||||||||||||| || ||||||||||||||| | |  || ||||    
T  25760200 actacaccaaaaaagggatttaatagcactttttt-gaccttcaatagcacttaaaagtgctattaaatcccccgctattgtaagtacagcacttataat 25760298  T
Q  199 agcacttttaaagggctatt 218  Q
    ||| ||||||||| ||||||    
T  25760299 agctcttttaaagtgctatt 25760318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 28160836 - 28160792
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgta 181  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||    
T  28160836 cctttaatagcacttaaaagtgctattaaagcccccgctattgta 28160792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 20756986 - 20756880
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaat 236  Q
    ||||| |||||| | |||||||||||||||  |||||||||||||| |  |||   ||||||||||||||||||| |||||||| || ||||| ||||||    
T  20756986 cctttaatagcatttaaaagtgctattaaacgcgccgctattgtaaatgcatcctctttaatagcacttttaaagtgctattaatagcctggtttttaat 20756887  T
Q  237 agcattt 243  Q
    |||||||    
T  20756886 agcattt 20756880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 43558091 - 43558050
Alignment:
Q  20 gaaaagatggtgggaattaagcttaggtagtttgggcatata 61  Q
    ||||||||||||| || ||||||||||| |||||||||||||    
T  43558091 gaaaagatggtggaaactaagcttaggtggtttgggcatata 43558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 2750524 - 2750650
Alignment:
Q  98 cactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaa 197  Q
    ||||||||||||||||||||||||||||||         | ||| |||||||| |||||||||||| ||||| ||||||||||||| |||     ||| |    
T  2750524 cactacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttga 2750623  T
Q  198 tagcacttttaaagggctattaaaagt 224  Q
    |||||||||||||| ||||||||||||    
T  2750624 tagcacttttaaagtgctattaaaagt 2750650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 23066791 - 23066892
Alignment:
Q  138 ctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaata 237  Q
    |||| |||||||| |||||||||||||||  ||||| |||||||| |  |||   |||||||| | |||||| | ||||||||||| ||||| |||||||    
T  23066791 ctttaatagcacttaaaagtgctattaaacgcgccgttattgtaaatgcatcctctttaatagtatttttaatgtgctattaaaagcctggtttttaata 23066890  T
Q  238 gc 239  Q
    ||    
T  23066891 gc 23066892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 11221518 - 11221450
Alignment:
Q  143 atagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaag 211  Q
    ||||||||  |||| ||||| ||| | ||||||||||||||| || | ||||||||||||| |||||||    
T  11221518 atagcactttaaagcgctataaaatctgccgctattgtaagtgtacccattttaatagcacatttaaag 11221450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 6032 - 5907
Alignment:
Q  99 actacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaat 198  Q
    |||||||||||||||||||||||||||||         | ||| |||||||| |||||||||||| ||||| ||||||||||||| |||     ||| ||    
T  6032 actacgccaaaaaagggatttaatagcacttttttttgcttttaatagcacttaaaagtgctattgaagcctccgctattgtaagcatacttcctttgat 5933  T
Q  199 agcacttttaaagggctattaaaagt 224  Q
    ||||||||||||| ||||||||||||    
T  5932 agcacttttaaagtgctattaaaagt 5907  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 16705877 - 16705997
Alignment:
Q  98 cactacgccaaaaaagggatttaatagcacnnnnnnngccctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaa 197  Q
    |||||| |||||||||||||||||||||||       | ||||  |||||||| ||||||||||||||| || ||||||||||||||| | |  || |||    
T  16705877 cactacaccaaaaaagggatttaatagcactttttttgaccttcaatagcacttaaaagtgctattaaatcccccgctattgtaagtacagcacttataa 16705976  T
Q  198 tagcacttttaaagggctatt 218  Q
    |||||| ||||||| ||||||    
T  16705977 tagcacatttaaagcgctatt 16705997  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 18204836 - 18204749
Alignment:
Q  137 cctttgatagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagt 224  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||| |||     ||||||||||||||||||  ||||||||||||    
T  18204836 cctttgatagcacttaaaagtgctattgaagcccccgctattgtaagcatacaacatttaatagcacttttaaaacgctattaaaagt 18204749  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 21654836 - 21654930
Alignment:
Q  143 atagcactaaaaagtgctattaaagccgccgctattgtaagtatatcgattttaatagcacttttaaagggctattaaaagtctggtgtttaata 237  Q
    |||||||| ||||| |||||||||  ||||||||||||||||  |||   | ||||||||||||||||| |||||||||||  ||||||||||||    
T  21654836 atagcacttaaaagggctattaaatgcgccgctattgtaagtgcatcctctgtaatagcacttttaaagtgctattaaaagcatggtgtttaata 21654930  T

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