View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12132_low_1 (Length: 441)
Name: NF12132_low_1
Description: NF12132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12132_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 32967132 - 32967555
Alignment:
| Q |
13 |
cacagaccaatttgccaccaggttttaggttccaccctactgatgcagaactcattcttcactaccttaggnnnnnnnttgcctccattcccttgcctgt |
112 |
Q |
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| T |
32967132 |
cacagaccaatttgccaccaggttttaggttccaccctactgatgcagaactcattcttcactaccttaggaaaaaaattgcctccattcccttgcctgt |
32967231 |
T |
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| Q |
113 |
ttccatcattgccgaagttgatatttataagttggatccttgggatttaccaggtttgtattctataaatttataagttgatccaaaatatacgtatgta |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32967232 |
ttccatcattgctgaagttgatatttataagttggatccttgggatttaccaggtttgtattctataaatttataagttgatccaaaatatacgtatgta |
32967331 |
T |
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| Q |
213 |
cttttttatatt--------------taataatgtgtgatgtggaaggttaatttacttttggtttgttgttgtttctttattttcagctaaggcttcat |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32967332 |
cttttttatattacttttttttaatttaataatgtgtgatgtggaaggttaatttacttttggtttgttgtggtttctttattttcagctaaggcttcat |
32967431 |
T |
|
| Q |
299 |
ttggtgagaaagaatggtacttttttagtcctagagatagaaagtacccaaacggtgcaaggccaaacagggcagctgcttcagggtattggaaagccac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32967432 |
ttggtgagaaagaatggtacttttttagtcctagagatagaaagtacccaaacggtgcaaggccaaacagggcagctgcttcagggtattggaaagccac |
32967531 |
T |
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| Q |
399 |
tggcactgataagaccatagtggc |
422 |
Q |
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| T |
32967532 |
tggcactgataagaccatagtggc |
32967555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 33727818 - 33727921
Alignment:
| Q |
298 |
tttggtgagaaagaatggtacttttttagtcctagagatagaaagtacccaaacggtgcaaggccaaacagggcagctgcttcagggtattggaaagcca |
397 |
Q |
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| T |
33727818 |
tttggggagaaagaatggtatttctttagtccaagagataggaagtatccaaatgggacaaggccaaatagagtagctggatctgggtattggaaagcaa |
33727917 |
T |
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| Q |
398 |
ctgg |
401 |
Q |
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|||| |
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| T |
33727918 |
ctgg |
33727921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 411
Target Start/End: Original strand, 35772720 - 35772823
Alignment:
| Q |
308 |
aagaatggtacttttttagtcctagagatagaaagtacccaaacggtgcaaggccaaacagggcagctgcttcagggtattggaaagccactggcactga |
407 |
Q |
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|||||||||| ||||| || || || |||||||| |||||||| || || ||||| || ||||| || |||| |||||||||||||| ||||| ||||| |
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| T |
35772720 |
aagaatggtattttttcagcccaagggatagaaaatacccaaatggggccaggcctaatagggctgcaacttctgggtattggaaagctactggaactga |
35772819 |
T |
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| Q |
408 |
taag |
411 |
Q |
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|||| |
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|
| T |
35772820 |
taag |
35772823 |
T |
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