View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12133_low_2 (Length: 251)
Name: NF12133_low_2
Description: NF12133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12133_low_2 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0304 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0023 (3 HSPs) |
| | |
|
| [»] scaffold0001 (2 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0241 (1 HSPs) |
| | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
| [»] scaffold0107 (3 HSPs) |
| | |
|
| [»] scaffold1900 (1 HSPs) |
| | |
|
| [»] scaffold0046 (1 HSPs) |
| | |
|
| [»] scaffold0239 (1 HSPs) |
| | |
|
| [»] scaffold0013 (3 HSPs) |
| | |
|
| [»] scaffold0100 (2 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 18168037 - 18168277
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18168037 |
cctttcgatgaagtgggtttgatttcccctatcacatccaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgctgggacgc |
18168136 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18168137 |
gctgaattccaacatatttttggcatccttggcatccttttgcgaactctatgcagtctttgagcatagtcggccaatataaaccttgtcgaaataaaag |
18168236 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18168237 |
ccatttcattttatggcctgcttggtgtgttccacaggttc |
18168277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14339061 - 14339288
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgactt-cccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacg |
99 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||| || ||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||| |
|
|
| T |
14339061 |
cctttcgatgaagtaggtttaattaacccctattacatctaaagtccatcctctaaatggccacggtttgattattgcatggagttcacttgctgggacg |
14339160 |
T |
|
| Q |
100 |
cgctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaa |
199 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||| |||||| | |
|
|
| T |
14339161 |
cgttgaattccagcgtatttttggcatccttggcatccttttgcgaattctatgcagtctttgagcatagttggccaatacaaaccttgtcaaaataaga |
14339260 |
T |
|
| Q |
200 |
gccatttcattttatggcctgcttggtg |
227 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
14339261 |
gccatttcattttgtggcctgcttggtg |
14339288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 14163618 - 14163823
Alignment:
| Q |
31 |
atcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccagcatatttttggcatcctt |
130 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||| || | ||||||| ||| || || || || ||||||| |||| ||| ||| |
|
|
| T |
14163618 |
atcacgtctaaagcccaacctctaaacggccaaggtttaattatcgagtgtaaatcacttgctggcacacgttggatcccagcatgcttttcgcactctt |
14163717 |
T |
|
| Q |
131 |
ggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttggtgcgt |
230 |
Q |
| |
|
||||||||||||| || | |||||||||||| |||||| |||||||||| |||| |||||||||| | ||| ||||||||||| ||||| || || || |
|
|
| T |
14163718 |
ggcatccttttgcaaaatttatgcaatctttccacatagttggccaatatacccctcgtcgaaataacaaccacttcattttatgacctgcatgatgtgt |
14163817 |
T |
|
| Q |
231 |
tccaca |
236 |
Q |
| |
|
|||||| |
|
|
| T |
14163818 |
tccaca |
14163823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 18463172 - 18463067
Alignment:
| Q |
119 |
tttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcc |
218 |
Q |
| |
|
|||| ||| |||| || ||||| || || |||||||||||||| |||||||| ||||| | | ||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
18463172 |
tttgacattcttgacaccctttggcaaagtctatgcaatcttttagcatagtttgccaaaacacaccttgtcaaaataaaagccatttcattttgtggtc |
18463073 |
T |
|
| Q |
219 |
tgcttg |
224 |
Q |
| |
|
|||||| |
|
|
| T |
18463072 |
tgcttg |
18463067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 19031584 - 19031824
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
19031584 |
cctttcgatgaagtaggtttgatttcccctatcacatctaaagcccaccctctaaatggccaaggtttaattatcgcatgaagttcacttgctgtgacgc |
19031683 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19031684 |
gctgaattccagcgtatttttggcatccttggcatccttttgcaaactctatgcaatcttttagcatagtcggccaatataacccttgtcgaaataaaag |
19031783 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19031784 |
ccatttcattttatggcccgcttggtgcgttccacaagttc |
19031824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 13780888 - 13780792
Alignment:
| Q |
128 |
cttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttg |
224 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| | || | |||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13780888 |
cttggcatccttttgcaaagtctatgcagtcttttaaaatggaaggccaataaacgccttgtcgaaacaaaagccatttcattttgtggcctgcttg |
13780792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 22642093 - 22641861
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22642093 |
cctttcgatgaagtgggtttgatttcccctatcacatccaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgctgggacgc |
22641994 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22641993 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgtagtctttgagcatagtcggccaatataaaccttgtcgaaataaaag |
22641894 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttcc |
233 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
22641893 |
tcatttcattttatggcctgcttggtgtgttcc |
22641861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23197259 - 23197499
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
23197259 |
cctttcgatgaagtgggtttaatttcccctatcacatccaaagcccatcctctaaatggccaaggtttgattatcgcatgaagttcacttgcttggacgc |
23197358 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
23197359 |
gctgaattccggcgtatttttggcacccttggcatccttttgcgaactctatgcaatctctgagcatagttggccaatataacccttgttgaaataaaag |
23197458 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23197459 |
ccatttcattttatggcctgcttggtgtgttccacaggttc |
23197499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23622863 - 23623103
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| || ||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
23622863 |
cctttcgatgaagtgggtttgatttcgcctatcacatccaaaccccatcctctaaatgggcaaggtttgattatcgcatgaagttcacttgctgggacac |
23622962 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23622963 |
gctaaattccatcatatttttggcatccttggcatccttttgcaaactctatgcagtctttgagcatagtcggccaatataagccttgtcgaaataaaag |
23623062 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23623063 |
ccatttcattttatggcctgcttggtgcgttccgcaggttc |
23623103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 24920277 - 24920037
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||||| ||||||||||| |||||||| ||||| ||||| ||||| || ||||||| || |||| |
|
|
| T |
24920277 |
cctttcgatgaggtgggtttgatttcccctattacatctaaggcccatcctctgaatggccacggtttgattattgcatggagctcacttgccggaacgc |
24920178 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||| || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
24920177 |
gttgaatcccggcgtatttttggcatccttgacagcctttggcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgatacaaaag |
24920078 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| || ||| |||| |||| |
|
|
| T |
24920077 |
ccatttcattttatgaccagcttgatgtgtttcacaagttc |
24920037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23810413 - 23810648
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| | ||||| | |||||| || || ||||||||||| ||||| |||||||||||||| | ||||| ||| | ||||||| ||| || | |
|
|
| T |
23810413 |
cctttcgatgatttaggtttaatttccccaattacatctaaagcccaacctctgaatggccaaggtttgactatcgaatgtaactcacttgctggcacac |
23810512 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||| ||| ||| ||||||||| |||||||| ||||| | || |||||||||||||| | ||| || |||||||||| ||||||||||| |||| |
|
|
| T |
23810513 |
gttgaatcccaccatgtttttggcacccttggcaacctttggaaaattctatgcaatctttcaacatggttggccaatatacgccttgtcgaaacaaaaa |
23810612 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| |
|
|
| T |
23810613 |
gcatttcattttgtggcctgctttgtgcgttccaca |
23810648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 25517944 - 25517868
Alignment:
| Q |
136 |
ccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcatttt |
212 |
Q |
| |
|
||||||| ||||| ||||||||||| | ||||| |||||||| || ||||||||||||| | |||||||||||| |
|
|
| T |
25517944 |
ccttttgaaaactcaatgcaatctttcaacatagatggccaatacaaaccttgtcgaaatattaaccatttcatttt |
25517868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 128948 - 129188
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| | |
|
|
| T |
128948 |
cctttcgatgaagtgggtttgatttcccctatcacatccaaagcccatcctctaaatggccaaggtttgattatcgcatgaagctcacttgctgggacac |
129047 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
129048 |
gctgaattccagcgtatttttggcatccttggcatccttttgcgaactctatgcagtctttgagcatagtcggccaatataaaccttgtcgaaataaaag |
129147 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
129148 |
ccatttcattttatggcctgcttggtgtgttccgcaggttc |
129188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13285781 - 13286016
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
13285781 |
cctttcgatgaagtgggtttaatttcccctatcacatccaaagcacatcctctaaatggccaaggtttgattatcgcatgaagttcacttgctgggacgc |
13285880 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13285881 |
gctgaattccggcatatttttggcacccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataaaccttgtcgaaataaaag |
13285980 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13285981 |
ccattttattttatggcctgcttggtgcgttccaca |
13286016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15150311 - 15150546
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||| |
|
|
| T |
15150311 |
cctttcgatgaggtgggtttaatttcccctatcacatccaaagcccatcctctaaatggccaaggtttgattatcgaatgaagttcgcttgctgggacgc |
15150410 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
15150411 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcagtcttttagcatagttggccaatataaaccttgtcgaaataaaag |
15150510 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15150511 |
ccatttcattttgtggcctgcttggtgcgttccaca |
15150546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14743382 - 14743622
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
14743382 |
cctttcgatgaggtgggtttgatttcccctatcacatctaaggcccatcctctgaatggccaaggtttgattattgcatgaagttcacttgccgggacgc |
14743481 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
14743482 |
gttgaattccagcgtatttttggcatccttgacatccctttgcgaattctatgcaatctttgagcatagttggccaatatagcccttgtcgaaacaaaag |
14743581 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||| |||| |
|
|
| T |
14743582 |
ccatttcattttatgaccagcttgatgtgttccacaagttc |
14743622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14676 - 14916
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||| | |
|
|
| T |
14676 |
cctttcgatgaggtgggtttgatttcccctatcacatccaaagcctatcctctaaatggccaaggtttgattatcgcatgaagttcacttgctaggaaac |
14775 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14776 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcagtctttgagcatagtcggccaatataaaccttgtcgaaataaaag |
14875 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14876 |
ccatttcattttatggcctgcttggtgtgttccacaggttc |
14916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34755 - 34515
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
34755 |
cctttcgatgaagtgggtttgatttcccctatcacatccaaagcccatcctctaaatggccaaggtttgactatcgcatgaagttcacttgccgggacgc |
34656 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34655 |
gctgaattccaacatatttttggcatccttggcatcctttcgcgaattctacgcaatctttgagcatagttggccaatataacccttgtcgaaataaaag |
34556 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
34555 |
ccatttcattttatggcccgcttggtgtgttccacaagttc |
34515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19440 - 19675
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| || |||||||||||| |||||||||||||||| ||||||| ||||||||| |||| |||||||| |
|
|
| T |
19440 |
cctttcgatgaggtgggtttaatttcccctatcacatccaaagcccatcctataaatggccaaggtttgattatcgaatgaagttcgcttgctgggacgc |
19539 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
19540 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcagtctttgagcatagttggccaatataaaccttgtcgaaataaaag |
19639 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19640 |
ccatttcattttgtggcctgcttggtgcgttccaca |
19675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35995 - 35760
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| || |||||||||||| |||||||||||||||| ||||||| ||||||||| |||| |||||||| |
|
|
| T |
35995 |
cctttcgatgaggtgggtttaatttcccctatcacatccaaagcccatcctttaaatggccaaggtttgattatcgaatgaagttcgcttgctgggacgc |
35896 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
35895 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaattctatgcagtctttgagcatagttggccaatataaaccttgtcgaaataaaag |
35796 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35795 |
ccatttcattttgtggcctgcttggtgcgttccaca |
35760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 27391 - 27156
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27391 |
cctttcaatgaagtgggtttaatttcccctatcacatccaaggcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgctgggacgc |
27292 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
27291 |
gctaaattccggcgtatttttggcacccttggcatccttttgcgaactctatgcaatctctgagcatagttggccaatataacccttgttggaataaaag |
27192 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27191 |
ccatttcattttatggcctgcttggtgcgttccaca |
27156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 702 - 940
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| | |
|
|
| T |
702 |
cctttcgatgaagtgggtttgatttctcctatcacatccaaagcccatcctctaaatggccaaggcttgattatcgcatgaagttcacttgccgggacac |
801 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
802 |
gctgaattccagcata-ttttggcatccttggcatccttttgcgaactctatgcagtctttgagcgtagtcggccaatataaaccttgtcgaaat-aaag |
899 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
900 |
ccatttcattttatggcctgcttggtgtgttccacaggttc |
940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 10156697 - 10156466
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
10156697 |
cctttcgatgaagtgggtttgatttcccctatcacatccaaagcccatcctctaaatggccaaggtttgattatcgcatgaagttcacttgctaggacgc |
10156598 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10156597 |
gctgaattccagcatatttttggcat---------ccttttgcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaataaaag |
10156507 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
10156506 |
ccatttcattttatggcccgcttggtgcgttccacaagttc |
10156466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14689847 - 14690073
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||| | |||| |||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| | |
|
|
| T |
14689847 |
cctttcgatgaagtgggtttaatttcctctattacatctaaagcccatcctctaaatggccaaggtttgattatcgcatggagttcacttgctgggactc |
14689946 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| || |
|
|
| T |
14689947 |
gttgaattccagcgtatttttggcatccttggcatccttttgcgaattctatgcagtctttgagcatagttggccaatacaagccttgtcgaaataagag |
14690046 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtg |
227 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
14690047 |
ccatttcattttgtggcctgcttggtg |
14690073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7361850 - 7362076
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||| ||||| | |||||||| || ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||||| |||||||| |
|
|
| T |
7361850 |
cctttcgatgaagtaggtttaatctcccctattacatctaaggcccatcctctaaatggccacggtttgattattgcatggagttcacttgctgggacgc |
7361949 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| || |
|
|
| T |
7361950 |
gttgaattccagcgtatttttggcatccttggcatccttttgcgaattctatgcagtctttgagcatagttggccaatacaaaccttgtcgaaataagag |
7362049 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtg |
227 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
7362050 |
ccatttcattttgtggcctgcttggtg |
7362076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 10785945 - 10785713
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||| ||| |||| |
|
|
| T |
10785945 |
cctttcgatgaagtgggtttaatctcccctatcacatctaaagcccatcctctgaatggccaaggttttattattgcatggagttcacttgctggaacgc |
10785846 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || || |
|
|
| T |
10785845 |
gttgaattccagcatatttctggcatccctggcatcctttcgcgaattctatgcaatctttgagcatagttggccaatataagccttgtcgaaacaagag |
10785746 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttcc |
233 |
Q |
| |
|
||||||||| || |||||||| ||||| ||||| |
|
|
| T |
10785745 |
ccatttcatcttgtggcctgcctggtgtgttcc |
10785713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12028809 - 12029026
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||| || || || || ||||||||||| |||||||||||||| ||||||||||| || ||||||| ||| |||| |
|
|
| T |
12028809 |
cctttcgatgatgtgggtttgatctccccaattacatccaaggcccatcctctgaatggccaaggtttgattatcgcatgcagctcacttgctggtacgc |
12028908 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| || |||||||||| ||||||||||| | ||| |
|
|
| T |
12028909 |
gctgaattccagcatatttttggcatccttggcaccctttagcgaattctttgcaatctttgagcatggttggccaatatacgccttgtcgaaacagaag |
12029008 |
T |
|
| Q |
201 |
ccatttcattttatggcc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12029009 |
ccatttcattttatggcc |
12029026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13032907 - 13032692
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||| || || || || |||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||| |
|
|
| T |
13032907 |
cctttcgatgatgtgggtttgaacaccccaattacatccaaggcccatcctctaaatggccaaggtttgattatcgcatgtagctcacttgctgggacgc |
13032808 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||| || ||||| ||||| |||||||||||||||||||| || |||||||||| ||||||||||| ||||| |
|
|
| T |
13032807 |
gttgagttccagcatgtttttggcatccttgtcaacctttagcgaattctatgcaatctttgagcatggttggccaatatacaccttgtcgaaacaaaag |
13032708 |
T |
|
| Q |
201 |
ccatttcattttatgg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13032707 |
ccatttcattttatgg |
13032692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 14145496 - 14145444
Alignment:
| Q |
37 |
tctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcact |
89 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || |||| ||| | |||||| |
|
|
| T |
14145496 |
tctagagcccatcctctaaatggccaaggttttatgatcgaatgtaattcact |
14145444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 73215 - 72975
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||| || |||||||| |||||||||||||||||||| ||||||| |||||||| |||| |||||| | |
|
|
| T |
73215 |
cctttcgatgaagtgggtttaatttctcctatcacatccaaagcccaccctctaaatggccaaggtttgattatcgtatgaagtttgcttgctgggacac |
73116 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
73115 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcagtctttgagcatagtcggccaatataaaccttgtcgaaacaagag |
73016 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
73015 |
ccatttcattttgtggcctgcctggtgtgttccgcaggttc |
72975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 67917 - 67691
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
67917 |
cctttcgatgaggtgggtttgatttcccctatcacatctaaggcccatcctctgaatggccaaggtttgattatcgcatgaagttcacttgtcgggacgc |
67818 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| || ||||||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
67817 |
gttgaattccagcgtacttttggcattcttgacatcgttttgcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
67718 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtg |
227 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
67717 |
ccatttcattttatggccagcttggtg |
67691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 77095 - 76869
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
77095 |
cctttcgatgaggtgggtttgatttcccctatcacatctaaggcccatcctctgaatggccaaggtttgattatcgcatgaagttcacttgtcgggacgc |
76996 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| || ||||||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
76995 |
gttgaattccagcgtacttttggcattcttgacatcgttttgcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
76896 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtg |
227 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
76895 |
ccatttcattttatggccagcttggtg |
76869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 7264 - 7053
Alignment:
| Q |
13 |
gtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccag |
112 |
Q |
| |
|
|||||||||| ||| || || || || || ||||| ||||| |||||||||||||||||||| ||||| || || |||| || ||| | |||||||| | |
|
|
| T |
7264 |
gtgggtttgatttctccaattacatccaaggcccaccctctgaatggccaaggtttaattattgcatgcagctctcttgccggaacgtgttgaattccgg |
7165 |
T |
|
| Q |
113 |
catatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcatttt |
212 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
7164 |
catatttttggcatccttgacaccctttagcgaattctatgcaatctttgagcatagttggccaatacaacccttgtcgaaacaaaagccatttcatttt |
7065 |
T |
|
| Q |
213 |
atggcctgcttg |
224 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
7064 |
atggccagcttg |
7053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 123189 - 123406
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
123189 |
cctttcgatgaggtgggtttgatttcccctatcacatctaaatcccatcctctaaatggccagggtttgattatcgcatgaagttcacatgccgggacgc |
123288 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
123289 |
gttgaattccatcgtatttttggcatccttggcatccttttgcgaaatctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
123388 |
T |
|
| Q |
201 |
ccatttcattttatggcc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
123389 |
ccatttcattttatggcc |
123406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 94768 - 94551
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||| ||||| |||||||||| |||||| || || || || ||||| ||||| ||||||| | |||| ||||| ||||| || || |||| || |||| |
|
|
| T |
94768 |
ccttttgatgatgtgggtttgatttccccaattacatccaaggcccaccctctgaatggcccaagtttgattattgcatgcagctcgcttgccggaacgc |
94669 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| |||||||| |||| |||||||||||||| || ||||| | ||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
94668 |
gttgaattccggcatggttttggcatccttgacaccctttagggaattctatgcaatctttgagcatagttggccaatacaacccttgtcgaaacaaaag |
94569 |
T |
|
| Q |
201 |
ccatttcattttatggcc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
94568 |
ccatttcattttatggcc |
94551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34060 - 34295
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||| ||| | |||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| |
|
|
| T |
34060 |
cctttcgatgaggtggttttaatttcccctatcacatccaaagcccatcctctaaatggccaaggtttgattatcgaatgaagttcgattgctgggacgc |
34159 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
34160 |
gctgaattccagcatatttctggcatccttagcatccttttgcgaattctatgcagtctttgagcatagttggccaatataaaccttgtcaaaataaaag |
34259 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
34260 |
ctatttcattttgtggcctgcttggtgcgttccaca |
34295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 15232 - 15001
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
15232 |
ccttttgatgaggtgggtttgatttcccctatcacatctaaagcccatcctctaaatggccagggtttgattatcgcatgaagttcacttgtcgggacgc |
15133 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
15132 |
gttgaattccagcgtacttttggcatcctt---------ttgcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
15042 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
15041 |
ccatttcattttatggccagcttggtgcgttccacaagttc |
15001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 22801197 - 22801436
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
22801197 |
cctttcgatgaggtgggtttgatttcccctatcacatctaaggcccatcctctgaatggccaaggtttgattattgcatgaagttcacttgccgggacgc |
22801296 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| |||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22801297 |
gttgaattccagcgtatttt-ggcatccttgacatccctttgcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
22801395 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||| |||| |
|
|
| T |
22801396 |
ccatttcattttatgaccagcttgatgtgttccacaagttc |
22801436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41376802 - 41377028
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||| | | |||| |
|
|
| T |
41376802 |
cctttcgatgaagtgggtttaatctcccctatcacatctaaagcccatcctctgaatggccaaggttttattattgcatggagttcacttgctagaacgc |
41376901 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || || |
|
|
| T |
41376902 |
gttgaattccagcgtatttttggcatccttggcatcctttcgcgaattctatgcaatctttgagcatagttggccaatataagccttgtcgaaacaagag |
41377001 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtg |
227 |
Q |
| |
|
||||||||| || |||||||||||||| |
|
|
| T |
41377002 |
ccatttcatcttgtggcctgcttggtg |
41377028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 22690639 - 22690854
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||| ||||| |||||||| | |||||| || || || || ||||| ||||| |||||||||||||| ||||||||||| || ||||||| ||| |||| |
|
|
| T |
22690639 |
cctttagatgatgtgggtttaatttccccaattacatccaaggcccaccctctgaatggccaaggtttgattatcgcatgcagctcacttgctggaacgc |
22690738 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| |||||||| ||||||||||||||| |||| || ||| | || || ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
22690739 |
gttgaattccggcatatttttggcattcttgacaccctctagcaaattctatgcaatctttgagcatagttggccaatacaacccttgtcgaaacaaaag |
22690838 |
T |
|
| Q |
201 |
ccatttcattttatgg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22690839 |
ccatttcattttatgg |
22690854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 21297721 - 21297504
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||| ||||| |||||||||| |||||| || || || || ||||| ||||| |||||||||||||| ||||||||||| | ||||||| ||| |||| |
|
|
| T |
21297721 |
ccttttgatgatgtgggtttgatttccccaattacatccaaggcccaccctctgaatggccaaggtttgattatcgcatgcaactcacttgctggaacgc |
21297622 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||| |||| ||||||||||||||| || ||| | ||||| |||||||||||||||| |||||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
21297621 |
gttgaattctggcatgtttttggcatccttgacaccctctagcgaattctatgcaatctttgaccatagttggccaatacaacccttgttgaaacaaaag |
21297522 |
T |
|
| Q |
201 |
ccatttcattttatggcc |
218 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
21297521 |
ctatttcattttatggcc |
21297504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 135459 - 135699
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||||| ||| ||||||| |||||||||||||| ||||| |||| ||||||||||| ||||||| |
|
|
| T |
135459 |
cctttcgatgaggtgggtttgatttcccctatcacatctaaggcctatcctctgaatggccaaggtttgattattgcataaagttcacttgccgggacgc |
135558 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
135559 |
gttgaatcccagcgtatttttggcatccttgacatccttttgcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
135658 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||| |||| |
|
|
| T |
135659 |
ccatttcattttatgaccagcttgatttgttccacaagttc |
135699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 22339998 - 22340238
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| || | ||||||||||| ||||||||||| || |||||||||||||||||||||| |||| || |
|
|
| T |
22339998 |
cctttcgatgaggtgggtttgatttcccctatcacatccagggcccatcctctgaatggccaaggcttgattatcgcatgaagttcacttgccgggaagc |
22340097 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||||||||| || |||||||||||||| |||||||||||||| | ||||||||||||||||||||| ||| | |||| |||||||||||| ||||| |
|
|
| T |
22340098 |
gttgaattccagcgtacttttggcatccttgacatccttttgcgaattttatgcaatctttgagcatagttggcaagtatagcccttgtcgaaacaaaag |
22340197 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
22340198 |
ccatttcattttatggccagcttggtgtgttccacaagttc |
22340238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 22712570 - 22712518
Alignment:
| Q |
172 |
ggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttg |
224 |
Q |
| |
|
|||||||| || ||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
22712570 |
ggccaatacaaaccttgtcgaaatattaaccatttcattttatgacctgcttg |
22712518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7922 - 7682
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||| || |||| ||||||||||| |||||||| ||||| ||||| ||||| || ||||||| || | || |
|
|
| T |
7922 |
cctttcgatgatgtgggtttgatttctcctattacatctagggcccatcctctgaatggccatggtttgattattgcatgtagctcacttgccggaaggc |
7823 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||| || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
7822 |
gttgaatcccggcgtatttttggcatccttgacaccctttggcgaattctatgcaatctttgagcatagttgaccaatataacccttgtcgaaaaaaaag |
7723 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||| |||| |
|
|
| T |
7722 |
ccatttcattttatgaccagcttgatgtgttccacaagttc |
7682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 16178 - 15938
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||| | |||||||||| ||| ||||| || |||| ||||||||||| |||||||| ||||| ||||| ||||| || ||||||| || | || |
|
|
| T |
16178 |
cctttcgataatgtgggtttgatttctcctattacatctacggcccatcctctgaatggccatggtttgattattgcatgtagctcacttgccggaaggc |
16079 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||| || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
16078 |
attgaatcccggcgtatttttggcatccttgacaccctttggcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
15979 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||| |||| |
|
|
| T |
15978 |
ccatttcattttatgaccagcttgatgtgttccacaagttc |
15938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22790 - 22550
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||| | |||||||||| ||| ||||| || |||| ||||||||||| |||||||| ||||| ||||| ||||| || ||||||| || | || |
|
|
| T |
22790 |
cctttcgataatgtgggtttgatttctcctattacatctacggcccatcctctgaatggccatggtttgattattgcatgtagctcacttgccggaaggc |
22691 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
||||| || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22690 |
attgaatcccggcgtatttttggcatccttgacaccctttggcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
22591 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
||||||||||||||| || ||||| || |||||||| |||| |
|
|
| T |
22590 |
ccatttcattttatgaccagcttgatgtgttccacaagttc |
22550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1900 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold1900
Description:
Target: scaffold1900; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 824 - 1064
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||| ||||| |||||||| | ||| ||||| || |||| ||||||||||| |||||||| ||||| ||||| ||||| || ||||||| || |||| |
|
|
| T |
824 |
ccttttgatgatgtgggtttaatttctcctattacatctacggcccatcctctgaatggccatggtttgattattgcatgtagctcacttgccggaacgc |
923 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaag |
200 |
Q |
| |
|
| ||||| | | ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
924 |
gttgaatctcgacgtatttttggcatccttgacaccctttggcgaattctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaag |
1023 |
T |
|
| Q |
201 |
ccatttcattttatggcctgcttggtgcgttccacaggttc |
241 |
Q |
| |
|
|||||| |||||||| || ||||| || |||||||| |||| |
|
|
| T |
1024 |
ccattttattttatgaccagcttgatgtgttccacaagttc |
1064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 21514652 - 21514540
Alignment:
| Q |
129 |
ttggcatccttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttggtgc |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
21514652 |
ttggcatccttttgcgaaatctatgcaatctttgagcatagttggccaatataacccttgtcgaaacaaaagccatttcattttatggcccgcttggtgc |
21514553 |
T |
|
| Q |
229 |
gttccacaggttc |
241 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
21514552 |
gttccacaagttc |
21514540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 224
Target Start/End: Original strand, 24666308 - 24666495
Alignment:
| Q |
37 |
tctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccagcatatttttggcatccttggcatc |
136 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||| | ||| | || ||||| || || |||||||||| |||| ||| ||||| ||||||| | |
|
|
| T |
24666308 |
tctaaagcccaacctctaaatggtcaaggttttattatggaatgtaatttacttgcaggtacatgctgaattcctgcatgtttctggcactcttggcacc |
24666407 |
T |
|
| Q |
137 |
cttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttg |
224 |
Q |
| |
|
||||||| ||||| ||||| ||||| | || | |||||||| ||||||||||||| || | ||||||||||||||| |||||||| |
|
|
| T |
24666408 |
cttttgcaaactcaatgcagtctttcaaaatggatggccaatacaacccttgtcgaagtattaaccatttcattttatgacctgcttg |
24666495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 56567 - 56404
Alignment:
| Q |
49 |
cctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccagcatatttttggcatccttggcatccttttgcgaact |
148 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| || || ||| || ||||| |||||||| |||| ||||||||||||||| || ||||| ||||| | |
|
|
| T |
56567 |
cctctgaatggccaaggtttgattattgcatgcagctcgcttaccggaacgcgttgaattccggcatgtttttggcatccttgacaccctttagcgaatt |
56468 |
T |
|
| Q |
149 |
ctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcatttt |
212 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
56467 |
ctatttaatctttgagcatagttggccaatacaacccttgtcgaaacaaaagccatttcatttt |
56404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0239 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 26062 - 26207
Alignment:
| Q |
1 |
cctttcgatgaagtgggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgc |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||| || || || || ||||||||||| |||||||||||||| ||||||||||| || |||||| ||||| || |
|
|
| T |
26062 |
cctttcgatgatgtgggtttgatctccccaattacatccaaggcccatcctctgaatggccaaggtttgattatcgcatgcagctcacttaatgggaagc |
26161 |
T |
|
| Q |
101 |
gctgaattccagcatatttttggcatccttggcatccttttgcgaa |
146 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
26162 |
gttgaattccagcatgtttttggcatccttggcaacctttagcgaa |
26207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 108967 - 108763
Alignment:
| Q |
37 |
tctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccagcatatttttggcatccttggcatc |
136 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||||| ||| || || |||| ||| || || || || ||| | | ||||||||| |||||||| | |
|
|
| T |
108967 |
tctaaagcccatcctctaaatggtcagggtttgattatcgaatgtagctcgcttgctggaacacgttggatcccaacgtgtttttggcacccttggcaac |
108868 |
T |
|
| Q |
137 |
cttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||| || || |||||||| ||||||||||| || |||||||| | ||||||||||| || |||||||||||||| ||| | || || ||||| || || |
|
|
| T |
108867 |
ctttagcaaattctatgcagtctttgagcatggttggccaatacacgccttgtcgaaacaagagccatttcattttgtggtcagcctgatgcgtcccgca |
108768 |
T |
|
| Q |
237 |
ggttc |
241 |
Q |
| |
|
||||| |
|
|
| T |
108767 |
ggttc |
108763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 152524 - 152343
Alignment:
| Q |
37 |
tctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccagcatatttttggcatccttggcatc |
136 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| ||||||| ||| || || |||| ||| || || || || ||||| | ||||||||| || || || | |
|
|
| T |
152524 |
tctaaagcccatcctctgagtggccagggtttgattatcgaatgtagctcgcttgctggaacacgttggatcccagcgtgtttttggcacccctgccaac |
152425 |
T |
|
| Q |
137 |
cttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcc |
218 |
Q |
| |
|
|||| || || |||||||| ||||||||||| || |||||||| | ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
152424 |
ctttagcaaattctatgcagtctttgagcatggttggccaatacacgccttgtcgaaacaagagccatttcattttgtggcc |
152343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 113208 - 113033
Alignment:
| Q |
37 |
tctaaagcccatcctctaaatggccaaggtttaattatcgcatgaagttcacttgttgggacgcgctgaattccagcatatttttggcatccttggcatc |
136 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||| | | || || |||| ||| || || || || ||| | | ||||||||| |||||||| | |
|
|
| T |
113208 |
tctaaagcccatcctctgaatggtcagggtttaattatcgaacgtagctcgcttgctggaacacgttggatcccaacgtgtttttggcacccttggcaac |
113109 |
T |
|
| Q |
137 |
cttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcatttt |
212 |
Q |
| |
|
|||| || || |||||| | ||||||||||| || |||||||| | ||||||||||| || |||||||||||||| |
|
|
| T |
113108 |
ctttagcaaattctatgtagtctttgagcatggttggccaatacacgccttgtcgaaacaagagccatttcatttt |
113033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 2634 - 2535
Alignment:
| Q |
137 |
cttttgcgaactctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttggtgcgttccaca |
236 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| || |||||||||| |||||||| || ||||||||||||||||| ||| |||||| || |||||||| |
|
|
| T |
2634 |
ctttggcgaattctatgcaatctttaagcatggttggccaatatacgccttgtcggaacaaaagccatttcattttgtggtttgcttgatgtgttccaca |
2535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 2710 - 2650
Alignment:
| Q |
16 |
ggtttgacttcccctatcacgtctaaagcccatcctctaaatggccaaggtttaattatcg |
76 |
Q |
| |
|
||||||| |||||| || |||||||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
2710 |
ggtttgatttccccaattacgtctaaagcccaacctctaaatggccagggtttgattatcg |
2650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 35249 - 35334
Alignment:
| Q |
148 |
tctatgcaatctttgagcatagtcggccaatataacccttgtcgaaataaaagccatttcattttatggcctgcttggtgcgttcc |
233 |
Q |
| |
|
||||||||||||||||| || || || |||||| ||||||||||| ||||||||||||||||||||| | || || |||||||| |
|
|
| T |
35249 |
tctatgcaatctttgaggatggttagctaatatacgccttgtcgaaacaaaagccatttcattttatggtcggcctgatgcgttcc |
35334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University