View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12134_low_1 (Length: 656)

Name: NF12134_low_1
Description: NF12134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12134_low_1
NF12134_low_1
[»] chr3 (1 HSPs)
chr3 (211-638)||(52086723-52087150)
[»] chr1 (3 HSPs)
chr1 (1-109)||(52980585-52980695)
chr1 (152-210)||(52980738-52980796)
chr1 (154-213)||(52980171-52980229)
[»] chr2 (2 HSPs)
chr2 (1-100)||(14519475-14519576)
chr2 (153-211)||(14519583-14519641)
[»] chr7 (8 HSPs)
chr7 (156-210)||(17502151-17502205)
chr7 (156-210)||(17508296-17508350)
chr7 (156-210)||(17544864-17544918)
chr7 (156-210)||(17551009-17551063)
chr7 (18-81)||(17502279-17502342)
chr7 (18-81)||(17508159-17508222)
chr7 (18-81)||(17544992-17545055)
chr7 (18-81)||(17550872-17550935)
[»] chr8 (1 HSPs)
chr8 (152-185)||(35411444-35411477)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 211 - 638
Target Start/End: Complemental strand, 52087150 - 52086723
Alignment:
Q  211 tagttttacatatctagctataagtgtgtaaccatttttcatttttataagaaaacttcaaccaaaacaaattctttaaaatcaccggctattccaattt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087150 tagttttacatatctagctataagtgtgtaaccatttttcatttttataaggaaacttcaaccaaaacaaattctttaaaatcaccggctattccaattt 52087051  T
Q  311 cccagtaaaatacatatatacactatgcccaaacataacaatattattaagaaaaggttactttgataaatacaaataaacggataatcaactaaaatca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087050 cccagtaaaatacatatatacactatgcccaaacataacaatattattaagaaaaggttactttgataaatacaaataaacggataatcaactaaaatca 52086951  T
Q  411 tacagcactaatttacaatgcagcaaaagcatcatccacccatctcttatgttgaacagatgcgtcgccattttcagtattattggcactagagcctaag 510  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52086950 tacagcactaatttacaaagcagcaaaagcatcatccacccatctcttatgttgaacagatgcgtcgccatttccagtattattggcactagagcctaag 52086851  T
Q  511 aatatggctccaacagcagctcgtactttgttcatcctctttcggtgtcgaattcgtcgtagaacaacttctttgtcaagattcttacagttctcaattg 610  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52086850 aatatggctccaacagcagcttgtactttgttcatcctctttcggtgtcgaattcgtcgtagaacaacttctttgtcaagattcttacagttctcaattg 52086751  T
Q  611 gttttaagaacaactgactagtaacgtt 638  Q
    ||||||||||||||||||||||||||||    
T  52086750 gttttaagaacaactgactagtaacgtt 52086723  T

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Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 52980585 - 52980695
Alignment:
Q  1 acaaacacatgatgtaatttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttc--cagagagacagtgagagaagaataga 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  52980585 acaaacacatgatgtaatttagagaaaagaaggaagaattttaaaacaacattgttgctgtgtttttgtttcgggagagagacggtgagagaagaataga 52980684  T
Q  99 gagaacatgtc 109  Q
    |||||||||||    
T  52980685 gagaacatgtc 52980695  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 52980738 - 52980796
Alignment:
Q  152 tttgattggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 210  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  52980738 tttgattggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 52980796  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 52980229 - 52980171
Alignment:
Q  154 tgattggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctctag 213  Q
    ||||| |||||||||||| ||| |||| |||| |||||||||| ||||||||||||||||    
T  52980229 tgattagttgtttctaaa-tataacgtgttatgttcgtttgcatctaagaatttctctag 52980171  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14519475 - 14519576
Alignment:
Q  1 acaaacacatgatgtaatttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttc--cagagagacagtgagagaagaataga 98  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  14519475 acaaacacatgatgtaatatagagaaaagaagaaagaattctaaaacaacattgttgctgtgtttttgtttctagagagagacggtgagagaagaataga 14519574  T
Q  99 ga 100  Q
    ||    
T  14519575 ga 14519576  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 14519583 - 14519641
Alignment:
Q  153 ttgattggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctct 211  Q
    |||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||    
T  14519583 ttgattggttgtttttaaactatgacgtgttatgttcgtttgcatctaagaatttctct 14519641  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 17502205 - 17502151
Alignment:
Q  156 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 210  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17502205 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17502151  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 17508296 - 17508350
Alignment:
Q  156 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 210  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17508296 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17508350  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 17544918 - 17544864
Alignment:
Q  156 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 210  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17544918 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17544864  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 17551009 - 17551063
Alignment:
Q  156 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 210  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17551009 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17551063  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 17502342 - 17502279
Alignment:
Q  18 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 81  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17502342 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17502279  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 17508159 - 17508222
Alignment:
Q  18 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 81  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17508159 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17508222  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 17545055 - 17544992
Alignment:
Q  18 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 81  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17545055 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17544992  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 17550872 - 17550935
Alignment:
Q  18 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 81  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17550872 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17550935  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 35411444 - 35411477
Alignment:
Q  152 tttgattggttgtttctaaactatgacgtattat 185  Q
    |||||||||||||||||||||||||| |||||||    
T  35411444 tttgattggttgtttctaaactatgaggtattat 35411477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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