View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12134_low_2 (Length: 515)
Name: NF12134_low_2
Description: NF12134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12134_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 18246007 - 18246226
Alignment:
| Q |
18 |
ggttctaatgcacttgcttttgttagctttagtagtgctaaccctggtttacagatattggattttgctttgtttaaaagtgattttccaacagagttga |
117 |
Q |
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| T |
18246007 |
ggttctaatgcacttgcttttgttagctttagtagtgctaaccctggtttacagatattggattttgctttgtttaaaagtgattttccaacggagttga |
18246106 |
T |
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| Q |
118 |
ttactgcaactacttttattgatgctgctgtagtgaagaagcttaagggtgttctcggaggtagtggttaaaactatgatgttactcatgaaagaatgag |
217 |
Q |
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| T |
18246107 |
ttactgcaactacttttattgatgctgctgtagtgaagaagcttaagggtgttcttggaggtagtggttaaaactatgatgttactcatgaaagaatgag |
18246206 |
T |
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| Q |
218 |
gaattaatcttgaggattag |
237 |
Q |
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|||||||||||||||||||| |
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| T |
18246207 |
gaattaatcttgaggattag |
18246226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 18253111 - 18253315
Alignment:
| Q |
18 |
ggttctaatgcacttgcttttgttagctttagtagtgctaaccctggtttacagatattggattttgctttgtttaaaagtgattttccaacagagttga |
117 |
Q |
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| T |
18253111 |
ggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctttgtttgaaagcgattttccaacgaagttga |
18253210 |
T |
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| Q |
118 |
ttactgcaactacttttattgatgctgctgtagtgaagaagcttaagggtgttctcggaggtagtggttaaaactatgatgttactc--atgaaagaatg |
215 |
Q |
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| T |
18253211 |
ttactgcaactacttttattgatcctgctgtagtgaagaagcttaagagtgttcttggaggtagtggtt-aaactatgatgttattcatatgaaagaatg |
18253309 |
T |
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| Q |
216 |
aggaat |
221 |
Q |
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|||||| |
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| T |
18253310 |
aggaat |
18253315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 18256457 - 18256253
Alignment:
| Q |
18 |
ggttctaatgcacttgcttttgttagctttagtagtgctaaccctggtttacagatattggattttgctttgtttaaaagtgattttccaacagagttga |
117 |
Q |
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| T |
18256457 |
ggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctttgtttgaaagcgattttccaacgaagttga |
18256358 |
T |
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| Q |
118 |
ttactgcaactacttttattgatgctgctgtagtgaagaagcttaagggtgttctcggaggtagtggttaaaactatgatgttactc--atgaaagaatg |
215 |
Q |
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| T |
18256357 |
ttactgcaactacttttattgatcctgctgtagtgaagaagcttaagggtattcttggaggtcgtggtt-aaattatgatgttattcatatgaaagagtg |
18256259 |
T |
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| Q |
216 |
aggaat |
221 |
Q |
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|||||| |
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| T |
18256258 |
aggaat |
18256253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 442
Target Start/End: Original strand, 18246288 - 18246415
Alignment:
| Q |
299 |
aaggaatgtaacttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttcttgaatatttgaatatttcttctttgtgcactttgcttgc |
398 |
Q |
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| T |
18246288 |
aaggaatgtaacttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttcttgaata---------------tttgtgcac-ttgcttgc |
18246371 |
T |
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| Q |
399 |
actggcaaactcagtttacttaatggataaaactcaacttatgt |
442 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18246372 |
actgccaaactcagtttacttaatggataaaactcaacttatgt |
18246415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 18256194 - 18256136
Alignment:
| Q |
311 |
ttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttcttgaatatttg |
369 |
Q |
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| T |
18256194 |
ttgagaaatttgtgacatgagatgaataaatgtatgtgttttattttcttgaatatttg |
18256136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 18253408 - 18253452
Alignment:
| Q |
314 |
agaaatttgtgacatgagatgaataaatgtatgtgttgtattttc |
358 |
Q |
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| T |
18253408 |
agaaatttgtgacatgagatgaataaacgtacatgttgtattttc |
18253452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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