View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12134_low_3 (Length: 500)

Name: NF12134_low_3
Description: NF12134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12134_low_3
NF12134_low_3
[»] chr8 (3 HSPs)
chr8 (61-486)||(12934458-12934883)
chr8 (381-486)||(17123537-17123650)
chr8 (1-50)||(12934171-12934220)
[»] chr4 (4 HSPs)
chr4 (61-486)||(14177728-14178153)
chr4 (61-486)||(28607720-28608146)
chr4 (1-50)||(14177441-14177490)
chr4 (1-50)||(28608385-28608434)
[»] chr7 (2 HSPs)
chr7 (61-486)||(15300244-15300669)
chr7 (1-50)||(15299957-15300006)
[»] chr6 (2 HSPs)
chr6 (245-278)||(22982171-22982204)
chr6 (245-278)||(23806204-23806237)


Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 61 - 486
Target Start/End: Original strand, 12934458 - 12934883
Alignment:
Q  61 agcaggtttctttccaatccggaaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag 160  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934458 agcaggtttctttccaatccgggaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag 12934557  T
Q  161 gatcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggg 260  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934558 gatcagattcgcttttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggg 12934657  T
Q  261 agctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttgg 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934658 agctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttgg 12934757  T
Q  361 ctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934758 ctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacc 12934857  T
Q  461 actctcgtacaaagcatattgatgtc 486  Q
    ||||||||||||||||||||||||||    
T  12934858 actctcgtacaaagcatattgatgtc 12934883  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 381 - 486
Target Start/End: Original strand, 17123537 - 17123650
Alignment:
Q  381 attgggaatgaagcaggaaaggtac--------gttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtaccactctcgtacaa 472  Q
    |||||||||||||||||||||||||        |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  17123537 attgggaatgaagcaggaaaggtacttcatgtcgttatccattgcgataatcaaagcgttttggattcgagtaagaatgcgatgtaccactcttgtacaa 17123636  T
Q  473 agcatattgatgtc 486  Q
    || |||||||||||    
T  17123637 agtatattgatgtc 17123650  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12934171 - 12934220
Alignment:
Q  1 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934171 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 12934220  T

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Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 61 - 486
Target Start/End: Original strand, 14177728 - 14178153
Alignment:
Q  61 agcaggtttctttccaatccggaaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag 160  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177728 agcaggtttctttccaatccgggaaaagaacactgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag 14177827  T
Q  161 gatcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggg 260  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177828 gatcaaattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggg 14177927  T
Q  261 agctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttgg 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177928 agctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttgg 14178027  T
Q  361 ctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178028 ctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacc 14178127  T
Q  461 actctcgtacaaagcatattgatgtc 486  Q
    ||||||||||||||||||||||||||    
T  14178128 actctcgtacaaagcatattgatgtc 14178153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 61 - 486
Target Start/End: Complemental strand, 28608146 - 28607720
Alignment:
Q  61 agcaggtttctttccaatccgg-aaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttgga 159  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28608146 agcaggtttctttccaatccgggaaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttgga 28608047  T
Q  160 ggatcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggg 259  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28608046 ggatcaaattcgattttgaaagcctacacagatgctgatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcagggg 28607947  T
Q  260 gagctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttg 359  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28607946 gagctgtatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaaccgaggcagaatatattgccatggctgaagcagggaaggaaatgctttg 28607847  T
Q  360 gctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtac 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607846 gctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtac 28607747  T
Q  460 cactctcgtacaaagcatattgatgtc 486  Q
    |||||||||||||||||||||||||||    
T  28607746 cactctcgtacaaagcatattgatgtc 28607720  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14177441 - 14177490
Alignment:
Q  1 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177441 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 14177490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28608434 - 28608385
Alignment:
Q  1 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28608434 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 28608385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 61 - 486
Target Start/End: Original strand, 15300244 - 15300669
Alignment:
Q  61 agcaggtttctttccaatccggaaaaagaacattgggaagctgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag 160  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15300244 agcaggtttctttccaatccgggaaaagaacattgggaagttgtgaagtggatcttgaggtatctgaaaggaagctctaataagtgcttatgctttggag 15300343  T
Q  161 gatcagattcgattttgaaaggctacacagatgcggatatggcaggtgacctggatggtagaaagtctacttcaggaattgtgtttacttttgcaggggg 260  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |    
T  15300344 gatcagattcgattttgaaaggctacacatatgcggatatggcaggtgacctggatggtagaaagtctgcttcaggaattgtgtttgcttttgcagggtg 15300443  T
Q  261 agctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttgg 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15300444 agctatatcttggcaatctaaattgcaaaaatgtgtagccttatcaacaactgaggcagaatatattgccatggctgaagcagggaaggaaatgctttgg 15300543  T
Q  361 ctaaaaagatttcttgatcaattgggaatgaagcaggaaaggtacgttatccattgcgatagtcaaagcgctttggatttgagtaagaatgcgatgtacc 460  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15300544 ctaaaaagaattcatgatcaattgggaatgaagcaggaaaggtacgttatccattgtgatagtcaaagcgctttggatttgagtaagaatgcgatgtacc 15300643  T
Q  461 actctcgtacaaagcatattgatgtc 486  Q
    ||||||||||||||||||||||||||    
T  15300644 actctcgtacaaagcatattgatgtc 15300669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15299957 - 15300006
Alignment:
Q  1 caaagcaaatcttaggcatgaagattttgcgagaccgaaaagctagaaag 50  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  15299957 caaagcaaatcttaggcatgaagactttgcgagaccggaaatctagaaag 15300006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 22982204 - 22982171
Alignment:
Q  245 ttacttttgcagggggagctatatcttggcaatc 278  Q
    |||||||||||||||||||||| |||||||||||    
T  22982204 ttacttttgcagggggagctatctcttggcaatc 22982171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 23806204 - 23806237
Alignment:
Q  245 ttacttttgcagggggagctatatcttggcaatc 278  Q
    |||||||||||||||||||||| |||||||||||    
T  23806204 ttacttttgcagggggagctatctcttggcaatc 23806237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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