View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12134_low_4 (Length: 417)

Name: NF12134_low_4
Description: NF12134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12134_low_4
NF12134_low_4
[»] chr2 (3 HSPs)
chr2 (10-402)||(18245513-18245905)
chr2 (10-370)||(18252649-18253009)
chr2 (10-370)||(18256559-18256919)
[»] chr6 (1 HSPs)
chr6 (300-376)||(30570605-30570681)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 18245905 - 18245513
Alignment:
Q  10 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245905 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 18245806  T
Q  110 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245805 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 18245706  T
Q  210 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245705 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 18245606  T
Q  310 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgttgatagtgttaggttttgtgtgttttt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245605 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgttgatagtgttaggttttgtgtgttttt 18245513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 18253009 - 18252649
Alignment:
Q  10 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 109  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||| ||||||||| ||||     
T  18253009 cagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccaacggctatatctaaacgagcaat 18252910  T
Q  110 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 209  Q
    |||||||||||||||||||| ||| | |||||| ||||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||    
T  18252909 ggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccg 18252810  T
Q  210 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 309  Q
    |||||| ||||||||||  |||||||||||||||||| ||||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  18252809 tggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctacta 18252710  T
Q  310 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcat 370  Q
    | |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||    
T  18252709 cggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagttagaatcatcttcat 18252649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 18256559 - 18256919
Alignment:
Q  10 cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag 109  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||| ||||     
T  18256559 cagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccacctacggctatatctaaacgtgcaat 18256658  T
Q  110 ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg 209  Q
    ||| |||||||||||||||| ||| | |||||| ||||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||    
T  18256659 ggatattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccg 18256758  T
Q  210 tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctgctacgcagaaatctacta 309  Q
    |||||| ||||||||||  |||||||||||||||||| ||||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||    
T  18256759 tggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctgctacgcagaaatctacta 18256858  T
Q  310 ctgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcat 370  Q
    | |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||    
T  18256859 cggatgcatgagcaagggaaagaagagaaaaaatgaagaagatagttagaatcatcttcat 18256919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 30570681 - 30570605
Alignment:
Q  300 aaatctactactgatgcatgagaaagggaaagaagagaaaaaatgaaggagatagctacaatcatcttcattttgtt 376  Q
    ||||||||||||||||||||||| | ||||| ||||||||||| |||  ||||||| | ||||||||||||||||||    
T  30570681 aaatctactactgatgcatgagagaaggaaataagagaaaaaacgaataagatagcaagaatcatcttcattttgtt 30570605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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