View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12134_low_5 (Length: 399)
Name: NF12134_low_5
Description: NF12134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12134_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 2693199 - 2692817
Alignment:
| Q |
1 |
taatgggtttctttggttttcaaggctcttcttctcggtatgttggaatttggtactacaacattcctggtccagaagttatttgggttgcaaacagaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2693199 |
taatgggtttctttggttttcaagactcttcttctcgttatgttggaatttggtactacaacattcctggtccagaagttatttgggttgcaaacagaaa |
2693100 |
T |
|
| Q |
101 |
cacacccatcaatgggaatggtggttcttttactataacagaaaacggtaatttagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2693099 |
cacacccatcaatggcaatggtggttcttttactataacagaaaacggtaatttagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtt |
2693000 |
T |
|
| Q |
201 |
tctagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatggtaatcttgttctttcaaatgataatgtggtgttatgggaaagcttta |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692999 |
tccagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatggtaatcttgttctttcaaatgataatgtggtgttatgggaaagcttta |
2692900 |
T |
|
| Q |
301 |
agcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatgggaagagttttttcttcacttcatggaaatcaagt |
383 |
Q |
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| T |
2692899 |
agcatccaagtgatacttatgtacctggtatgaaagttcctgtgaatgggaagagttttttcttcacttcatggaaatcaagt |
2692817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 2700899 - 2700519
Alignment:
| Q |
3 |
atgggtttctttggttttcaaggctcttcttctcggtatgttggaatttggtactacaacattcctggtccagaagttatttgggttgcaaacagaaaca |
102 |
Q |
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| T |
2700899 |
atgggtttctttgggtttgaaaattcttcttcacgttacgttggtatttggtactacaacattcctggacccgaagttatttgggttgcaaacagaaaca |
2700800 |
T |
|
| Q |
103 |
cacccatcaatgggaatggtggttcttttactataacagaaaacggtaatttagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtttc |
202 |
Q |
| |
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|||||||||||| || |||||||| || ||| || || |||||| || |||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
2700799 |
aacccatcaatggaaacggtggttccttcactgtatcaacaaacggaaacttagttatccttgatggaaacaaaaaccaactttggtcaaccaatgtttc |
2700700 |
T |
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| Q |
203 |
tagcgttcgaaacaatatgaataacactgaagcttttgttagagatgatggtaatcttgttctttcaaatgataatgtggtgttatgggaaagctttaag |
302 |
Q |
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|| | | | || ||||| ||||||| | |||||| || || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| || |
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| T |
2700699 |
tatcatccaaaccaataagaataactcggaagctgttcttcgagatgatggtaatcttgttctttcaaatgagaaagtggtgttatgggaaagctttgag |
2700600 |
T |
|
| Q |
303 |
catccaagtgatacttatgtacctggtatgaaagttcctgtgaatgggaagagttttttcttcacttcatggaaatcaagt |
383 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2700599 |
aatccaagcgatacttatgtacctggtatgaaagttcctgttaatgggaagagttttttcttcacttcatggaaatcaagt |
2700519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 383
Target Start/End: Complemental strand, 14522251 - 14521894
Alignment:
| Q |
26 |
ctcttcttctcggtatgttggaatttggtactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaatgggaatggtggt |
125 |
Q |
| |
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|||||||||||| ||||| || ||||||||||| ||||| ||||| || | |||||||||||||||| |||||||||||||| ||||| || ||||| |
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| T |
14522251 |
ctcttcttctcgttatgtcggtatttggtactataacatacctggaccgcagattatttgggttgcaaatagaaacacacccataaatggcaaccgtggt |
14522152 |
T |
|
| Q |
126 |
tcttttactataacagaaaacggtaatttagttatccttgatgaaaacaaaaaccaactatggtctaccaatgtttctagcgttcgaaacaatatgaata |
225 |
Q |
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||||| ||| || | ||||| |||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||| | || |||||||| | ||| |
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| T |
14522151 |
tctttcactgtagcggaaaatggtaatttggttatccttgatgaaaacaaaaaccaaatatggtcgacaaatgtttctatcagtcaaaacaatacggata |
14522052 |
T |
|
| Q |
226 |
acactgaagcttttgttagagatgatggtaatcttgttctttcaaatgataatgtggtgttatgggaaagctttaagcatccaagtgatacttatgtacc |
325 |
Q |
| |
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|| ||||||| || |||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||| || ||||| |||||||||||||||| |
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| T |
14522051 |
actatgaagctgttcttagagatgatggtaatcttgttcttgcgaatgagaatgcggtgttatgggaaagctttgagaatccatgtgatacttatgtacc |
14521952 |
T |
|
| Q |
326 |
tggtatgaaagttcctgtgaatgggaagagttttttcttcacttcatggaaatcaagt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14521951 |
tggtatgaaagttcctgtgaatgggaagagttttttcttcacatcatggaaatcaagt |
14521894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 31730783 - 31730853
Alignment:
| Q |
43 |
ttggaatttggtactacaacattcctggtccagaagttatttgggttgcaaacagaaacacacccatcaat |
113 |
Q |
| |
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|||| ||||||||| | |||||||||| || | || || ||||||||||||||||||||| ||||||||| |
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| T |
31730783 |
ttggtatttggtacaaaaacattcctgttcaaaaatttgtttgggttgcaaacagaaacaatcccatcaat |
31730853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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