View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12135_high_2 (Length: 483)

Name: NF12135_high_2
Description: NF12135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12135_high_2
NF12135_high_2
[»] chr8 (14 HSPs)
chr8 (1-473)||(17331537-17332009)
chr8 (1-473)||(17307850-17308322)
chr8 (1-473)||(17325720-17326192)
chr8 (19-127)||(17297548-17297654)
chr8 (81-181)||(17233730-17233834)
chr8 (17-74)||(17245138-17245195)
chr8 (5-73)||(17238527-17238595)
chr8 (19-115)||(17243359-17243454)
chr8 (265-386)||(17297321-17297456)
chr8 (81-129)||(17243302-17243350)
chr8 (81-129)||(17254535-17254583)
chr8 (411-456)||(17233425-17233470)
chr8 (1-66)||(17233896-17233961)
chr8 (19-115)||(17254592-17254687)
[»] scaffold0101 (5 HSPs)
scaffold0101 (19-397)||(19407-19761)
scaffold0101 (19-177)||(29814-29972)
scaffold0101 (1-129)||(23355-23480)
scaffold0101 (212-329)||(23175-23293)
scaffold0101 (414-456)||(18261-18303)


Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 17332009 - 17331537
Alignment:
Q  1 agcacagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgtt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17332009 agcatagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgtt 17331910  T
Q  101 actctttggtgttgcaggagcaataatctatgtatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttctggttgatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17331909 actctttggtgttgcaggagcaataatctatgtatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttctggttgatt 17331810  T
Q  201 ctttggtagactgatgtttgcagttcttatttaatgatctgattgtttagtttgtttgggctataattgattgttctctaatttctctgttacagcaagt 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17331809 ctttggtagactgatgtttgcagttcttatgtaatgatctgattgtttagtttgtttgggttataattgattgttctctaatttctctgttacagcaagt 17331710  T
Q  301 attattaatcgtcaacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagccggagttctgacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  17331709 attattaatcgtcaacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagctggagttctgatat 17331610  T
Q  401 ctctaacaacggcttggtttggagatttaaactatcttccttctgtttgtcatggttaagtgttacacaggtt 473  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17331609 gtctaacaacggcttggtttggagatttaaactatcttccgtctgtttgtcatggttaagtgttacataggtt 17331537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 17308322 - 17307850
Alignment:
Q  1 agcacagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgtt 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17308322 agcatagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgtt 17308223  T
Q  101 actctttggtgttgcaggagcaataatctatgtatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttctggttgatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17308222 actctttggtgttgcaggagcaataatctatgtatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttctggttgatt 17308123  T
Q  201 ctttggtagactgatgtttgcagttcttatttaatgatctgattgtttagtttgtttgggctataattgattgttctctaatttctctgttacagcaagt 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  17308122 ctttggtagactgatgtttgcagttcttatgtaatgatctgattgtttagtttgtttgggttataattgattgttctctaatttctatgttacagcaagt 17308023  T
Q  301 attattaatcgtcaacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagccggagttctgacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  17308022 attattaatcgtcaacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagctggagttctgatat 17307923  T
Q  401 ctctaacaacggcttggtttggagatttaaactatcttccttctgtttgtcatggttaagtgttacacaggtt 473  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17307922 gtctaacaacggcttggtttggagatttaaactatcttccgtctgtttgtcatggttaagtgttacataggtt 17307850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 17326192 - 17325720
Alignment:
Q  1 agcacagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgtt 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17326192 agcatagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattagtt 17326093  T
Q  101 actctttggtgttgcaggagcaataatctatgtatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttctggttgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17326092 actctttggtgttgcaggagcaataatctatgtatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttatggttgatt 17325993  T
Q  201 ctttggtagactgatgtttgcagttcttatttaatgatctgattgtttagtttgtttgggctataattgattgttctctaatttctctgttacagcaagt 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  17325992 ctttggtagactgatgtttgcagttcttatgtaatgatctgattgtttagtttgtttgggttataattgattgttctctaatttctatgttacagcaagt 17325893  T
Q  301 attattaatcgtcaacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagccggagttctgacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  17325892 attattaatcgtcaacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagctggagttctgatat 17325793  T
Q  401 ctctaacaacggcttggtttggagatttaaactatcttccttctgtttgtcatggttaagtgttacacaggtt 473  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  17325792 gtctaacaacggcttggtttggagatttaaactatcttccgtctgtttgtcatggttaagtgttacataggtt 17325720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 17297654 - 17297548
Alignment:
Q  19 tttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgttactctttggtgttgcagg 118  Q
    ||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  17297654 tttatttggtgatatttattataatcattttgttttcaatatttctttaactactc--agagtgaatatttcttgattcgttactctttggtgttgcagg 17297557  T
Q  119 agcaataat 127  Q
    |||||||||    
T  17297556 agcaataat 17297548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 17233834 - 17233730
Alignment:
Q  81 tgaatatttcttgattcgttactctttggtgttgcaggagcaataatctatg----tatgatttcttacgattctatctatcattctcttgtttgatcct 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||||||| |||||||||||||||||||||||||| ||    
T  17233834 tgaatatttcttgattcgttactctttggtgttgcaggagcaataatctgtgcacatatgatttcttacggttctatctatcattctcttgtttgatact 17233735  T
Q  177 catgt 181  Q
    |||||    
T  17233734 catgt 17233730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 17245195 - 17245138
Alignment:
Q  17 tatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactc 74  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17245195 tatttatttggtgatatctatcataatctttttgttttcaatatttctttaactactc 17245138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 17238595 - 17238527
Alignment:
Q  5 cagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactact 73  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  17238595 cagagcctagcatatttatttggtgatatctatcataatctttttgttttcaatatttctttaaatact 17238527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 17243454 - 17243359
Alignment:
Q  19 tttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgttactctttggtgttgc 115  Q
    ||||| ||||||||||||||||||| | ||||||| |||||||||||| ||| ||  |||  |||||||||||||||| |||||| |||||||||||    
T  17243454 tttatatggtgatatctatcataat-tctttgtttacaatatttctttcactgctaagagtatgaatatttcttgattggttactttttggtgttgc 17243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 17297456 - 17297321
Alignment:
Q  265 aattgattgttctctaatttctctgttacagcaagtattattaatcgtc------aacagatgttgttttgtgtttaaggt--------ttgagtaatag 350  Q
    ||||| ||||||||||||| ||||||||||  || |||||||| || ||      ||||||||||||||||||||||||||        ||||||| |||    
T  17297456 aattggttgttctctaattcctctgttacaataaatattattattcctctgttacaacagatgttgttttgtgtttaaggtattgctatttgagtagtag 17297357  T
Q  351 gtaacagttatgttttgtggaacttggaaacatagc 386  Q
    |||||||| || ||||||||||||||||||||||||    
T  17297356 gtaacagtaatattttgtggaacttggaaacatagc 17297321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 17243350 - 17243302
Alignment:
Q  81 tgaatatttcttgattcgttactctttggtgttgcaggagcaataatct 129  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  17243350 tgaatatttcttcattcgttactttttggtgttgcaggagcaataatct 17243302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 17254583 - 17254535
Alignment:
Q  81 tgaatatttcttgattcgttactctttggtgttgcaggagcaataatct 129  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  17254583 tgaatatttcttgattcgttgctctctggtgttgcaggagcaataatct 17254535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 17233470 - 17233425
Alignment:
Q  411 ggcttggtttggagatttaaactatcttccttctgtttgtcatggt 456  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  17233470 ggcttggtttggagagttaaaatatcttccttctgtttgtcatggt 17233425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17233961 - 17233896
Alignment:
Q  1 agcacagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttcttt 66  Q
    |||| |||| |||| || ||||||||||||||||||| || |||| |||| |||||||||||||||    
T  17233961 agcatagagtctagcgtttttatttggtgatatctattattatctttttgctttcaatatttcttt 17233896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 17254687 - 17254592
Alignment:
Q  19 tttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgttactctttggtgttgc 115  Q
    ||||| ||||||||| ||||||||||| ||| |||   |||||||||| ||| ||  |||  |||||||||||||||| |||||| |||||||||||    
T  17254687 tttatatggtgatat-tatcataatctgtttttttatgatatttctttcactgctaagagtatgaatatttcttgattggttactttttggtgttgc 17254592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 19761 - 19407
Alignment:
Q  19 tttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgttactctttggtgttgcagg 118  Q
    ||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||  ||  ||||||||||||||||||||| |||||||||||||| |    
T  19761 tttatatggtgatatctatcatattctttttgctttcaatatttctttaactactca-agtatgaatatttcttgattcgttattctttggtgttgcaag 19663  T
Q  119 agcaataatctatg----tatgatttcttacgattctatctatcattctcttgtttgatcctcatgttattcttttctggttgattctttggtagactga 214  Q
    ||||||||||| ||    |||||||||||||| |||||||||||||||||||||||||| |||||                ||||| || ||||   |||    
T  19662 agcaataatctgtgtacatatgatttcttacggttctatctatcattctcttgtttgatactcat---------------atgattattcggtatcttga 19578  T
Q  215 tgtttgcagttctta-tttaatgatctgattgtttagtttgtttgggctataattgattgttctctaatttctctgttacagcaagtattattaatcgtc 313  Q
     ||||| |||||||| ||| |||||||||||||| || ||||||||| |  ||||||||||||||||||| || ||||||| ||| |||||||  || |     
T  19577 cgtttggagttcttattttgatgatctgattgttcagattgtttgggttccaattgattgttctctaattcctatgttacaacaaatattattcttcata 19478  T
Q  314 aacagatgttgttttgtgtttaaggtttgagtaataggtaacagttatgttttgtggaacttggaaacatagccggagttctga 397  Q
     ||||||||||||||| |||||             |||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  19477 gacagatgttgttttgcgttta-------------aggtaacagtaatgttttgtggaacttggaaacatagctggagttctga 19407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 29972 - 29814
Alignment:
Q  19 tttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagagtgaatatttcttgattcgttactctttggtgttgcagg 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    |||  |||||||| ||  ||||  ||||||||||    
T  29972 tttatttggtgatatctatcataatctttttgttttcaatatttctttaactactatcagag----tatgacttgattcattgttcttcagtgttgcagg 29877  T
Q  119 agcaataatctatg----tatgatttcttacgattctatctatcattctcttgtttgatcctc 177  Q
    ||||||||||| ||    || ||||||||||||||||||||||||||||||||||||||||||    
T  29876 agcaataatctgtgaacttacgatttcttacgattctatctatcattctcttgtttgatcctc 29814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 23480 - 23355
Alignment:
Q  1 agcacagagcctagtgtatttatttggtgatatctatcataatctatttgttttcaatatttctttaactactctgagag--tgaatatttcttgattcg 98  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||  ||||  ||||||||||||||||||    
T  23480 agcatagagcctagcgtatttatttggtgatatctaacataat---tttgttttcaatatttctttaactactccaagagtatgaatatttcttgattcg 23384  T
Q  99 ttactctttggtgttgcaggagcaataatct 129  Q
    ||||||  |||||||||||||||||||||||    
T  23383 ttactc--tggtgttgcaggagcaataatct 23355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 23293 - 23175
Alignment:
Q  212 tgatgtttgcagttcttatt-taatgatctgattgtttagtttgtttgggctataattgattgttctctaatttctctgttacagcaagtattattaatc 310  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||||||| |  |||||||| ||||||| || |||||||||| |||  ||||||  ||    
T  23293 tgatgtttgcagttcttattctaatgatctgtttgttcagtttgtttgggttccaattgattattctctagttactctgttacaacaaagattattcttc 23194  T
Q  311 gtcaacagatgttgttttg 329  Q
    ||  || ||||||||||||    
T  23193 gtagaccgatgttgttttg 23175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 18303 - 18261
Alignment:
Q  414 ttggtttggagatttaaactatcttccttctgtttgtcatggt 456  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  18303 ttggtttgtagatttaaactatcttccttctgtttgtcatggt 18261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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