View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12135_low_1 (Length: 634)
Name: NF12135_low_1
Description: NF12135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12135_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Complemental strand, 37939802 - 37939187
Alignment:
| Q |
1 |
atagttactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaacccgtggttactgaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
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|
| T |
37939802 |
atagttactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaaattacaaaaacagtaaaagaacccctggttactgaag |
37939703 |
T |
|
| Q |
101 |
ttgatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939702 |
ttgatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctagagaaatggtaaaagaagaacctgtggctactgaagttcaagctac |
37939603 |
T |
|
| Q |
201 |
agaaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttgaggaaaatcagaaagaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939602 |
agaaacggtaaaagaagaacctgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttgaggaaaatcagaaagaa |
37939503 |
T |
|
| Q |
301 |
ccagaacaacattcaacggaacgaagggaagaggagcaaccaaacgcatcttcaattccagaacagtctacagaaaccaatgatttcattgctgtagaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37939502 |
ccagaacaacattcaacggaacgaagggaagaggagcaaccaaacgcatcttcaattccagaacagtctacagaaaccaatgatgtcattgctgtagaag |
37939403 |
T |
|
| Q |
401 |
aaaagtcaagagaattagaatttgaggcagcgatactgaaagagactaagaacgacgaagcagggccagctgaaacagagaaagtagagcctgtggttac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939402 |
aaaagtcaagagaattagaatttgaggcagcgatactgaaagagactaagaacgacgaagcagggccagctgaaacagagaaagtagagcctgtggttac |
37939303 |
T |
|
| Q |
501 |
tgaagtggatgaaaaccaaagtgaaccaggaattcaatcattcaaacaagaggaagaagtgaaaccaaaggaagaaactgaaaatcaagaacaaacaggt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37939302 |
tgaagtggatgaaaaccaaagtgaaccaggaattcaatcattcaaacaagaggaagaagtgaaaccaaaggaagaaactgaaaatcaagaacaaacaggt |
37939203 |
T |
|
| Q |
601 |
gatagagtggaggttc |
616 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37939202 |
gatagagtggaggttc |
37939187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 37940384 - 37940099
Alignment:
| Q |
4 |
gttactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaa---cccgtggttactgaag |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||| ||||||||| |||||||| ||||| ||||||||||||||| || | | |||||||| |
|
|
| T |
37940384 |
gttactgaagttgaggctacagaaacactaaaagaagaacttgtggctactgaagttgaggctacggaaacagtaaaagaagaacctgcagctactgaag |
37940285 |
T |
|
| Q |
101 |
ttgatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctac |
200 |
Q |
| |
|
|| | | |||||| | ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| | ||||||| |
|
|
| T |
37940284 |
ttaaggttacagaaaccgtaaaagacgaacctgtggttactgaagttgatcctacagaaacggtaaaagaagaacctctagctactgaagctgaagctac |
37940185 |
T |
|
| Q |
201 |
agaaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttgagg |
286 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
37940184 |
agaaacagtaaaagaagaacccgtggctactgaagttgagcctacagaaacggtaaaagaagaacctgtggcaactgaagttgagg |
37940099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 37940249 - 37939966
Alignment:
| Q |
4 |
gttactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaa---cccgtggttactgaag |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| || | ||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37940249 |
gttactgaagttgatcctacagaaacggtaaaagaagaacctctagctactgaagctgaagctacagaaacagtaaaagaagaacccgtggctactgaag |
37940150 |
T |
|
| Q |
101 |
ttgatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctac |
200 |
Q |
| |
|
|||| | |||||| | ||||||| ||||||||| ||||||||||| |||||||||||| |||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
37940149 |
ttgagcctacagaaacggtaaaagaagaacctgtggcaactgaagttgaggctacagaaacggtaaaagacgaacctgcagctactgaagttgaagctac |
37940050 |
T |
|
| Q |
201 |
agaaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttga |
284 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
37940049 |
agaaacagtaaaagaagaaccagtggctactgaagttgaagctacagaaacagtaaaagaagaaccagtggctactgaagttga |
37939966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 37940202 - 37939921
Alignment:
| Q |
6 |
tactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaa---cccgtggttactgaagtt |
102 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||| | |||||||| |||||||| |||||||||| ||||||||| || |||| ||||||||| |
|
|
| T |
37940202 |
tactgaagctgaagctacagaaacagtaaaagaagaacccgtggctactgaagttgagcctacagaaacggtaaaagaagaacctgtggcaactgaagtt |
37940103 |
T |
|
| Q |
103 |
gatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacag |
202 |
Q |
| |
|
|| |||||| | ||||||| | |||||| | |||||||||||| |||||||||| | |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
37940102 |
gaggctacagaaacggtaaaagacgaacctgcagctactgaagttgaagctacagaaacagtaaaagaagaaccagtggctactgaagttgaagctacag |
37940003 |
T |
|
| Q |
203 |
aaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttga |
284 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
37940002 |
aaacagtaaaagaagaaccagtggctactgaagttgaagctacagaaacagtaaaagaagaatctgtggctactgaagttga |
37939921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 37940111 - 37939847
Alignment:
| Q |
7 |
actgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaa---cccgtggttactgaagttg |
103 |
Q |
| |
|
||||||||||| ||||||| || |||||||| ||| ||| ||||| |||||||||||||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
37940111 |
actgaagttgaggctacagaaacggtaaaagacgaacctgcagctactgaagttgaagctacagaaacagtaaaagaagaaccagtggctactgaagttg |
37940012 |
T |
|
| Q |
104 |
atctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacaga |
203 |
Q |
| |
|
| |||||| ||||||||| |||| |||| |||||||||||| |||||||||| | |||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
37940011 |
aagctacagaaacagtaaaagaagaaccagtggctactgaagttgaagctacagaaacagtaaaagaagaatctgtggctactgaagttgaagctacaga |
37939912 |
T |
|
| Q |
204 |
aacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctg |
268 |
Q |
| |
|
||| |||||||||||||| ||| | |||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37939911 |
aaccgtaaaagaagaacctgtgacaactgtagttgagcctacagaaatggtaaaagatgaacctg |
37939847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 37940337 - 37940056
Alignment:
| Q |
6 |
tactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaaga---acccgtggttactgaagtt |
102 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||| ||| ||||| |||||| | | ||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
37940337 |
tactgaagttgaggctacggaaacagtaaaagaagaacctgcagctactgaagttaaggttacagaaaccgtaaaagacgaacctgtggttactgaagtt |
37940238 |
T |
|
| Q |
103 |
gatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacag |
202 |
Q |
| |
|
|||| |||||| | ||||||| ||||| | | |||||||| ||| |||||||||| | |||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
37940237 |
gatcctacagaaacggtaaaagaagaacctctagctactgaagctgaagctacagaaacagtaaaagaagaacccgtggctactgaagttgagcctacag |
37940138 |
T |
|
| Q |
203 |
aaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttga |
284 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||| ||||||| | |||||||||||| |
|
|
| T |
37940137 |
aaacggtaaaagaagaacctgtggcaactgaagttgaggctacagaaacggtaaaagacgaacctgcagctactgaagttga |
37940056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 37940067 - 37939786
Alignment:
| Q |
6 |
tactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaa---cccgtggttactgaagtt |
102 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
37940067 |
tactgaagttgaagctacagaaacagtaaaagaagaaccagtggctactgaagttgaagctacagaaacagtaaaagaagaaccagtggctactgaagtt |
37939968 |
T |
|
| Q |
103 |
gatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacag |
202 |
Q |
| |
|
|| |||||| ||||||||| || |||||| |||||||||||| |||||||||| | |||||||||||||||| | |||| |||| | |||||| |
|
|
| T |
37939967 |
gaagctacagaaacagtaaaagaagaatctgtggctactgaagttgaagctacagaaaccgtaaaagaagaacctgtgacaactgtagttgagcctacag |
37939868 |
T |
|
| Q |
203 |
aaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttga |
284 |
Q |
| |
|
||| ||||||||| ||||| | ||||||||| | ||| | |||||||| ||||||| |||||| | |||||||||||||| |
|
|
| T |
37939867 |
aaatggtaaaagatgaacctgcagctactgaattcgaggcaacagaaacggtaaaagacgaacctatagttactgaagttga |
37939786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 37940022 - 37939741
Alignment:
| Q |
6 |
tactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaaaagaac---ccgtggttactgaagtt |
102 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
37940022 |
tactgaagttgaagctacagaaacagtaaaagaagaaccagtggctactgaagttgaagctacagaaacagtaaaagaagaatctgtggctactgaagtt |
37939923 |
T |
|
| Q |
103 |
gatctgacagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacag |
202 |
Q |
| |
|
|| |||||| | ||||||| |||||||| |||| |||||| |||||||||| || |||||| ||||||| ||||||||| | | || |||| |
|
|
| T |
37939922 |
gaagctacagaaaccgtaaaagaagaacctgtgacaactgtagttgagcctacagaaatggtaaaagatgaacctgcagctactgaattcgaggcaacag |
37939823 |
T |
|
| Q |
203 |
aaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttga |
284 |
Q |
| |
|
||||||||||||| ||||| | | |||||||||||| |||||||| |||||||||| ||| |||||| ||| |||||||| |
|
|
| T |
37939822 |
aaacggtaaaagacgaacctatagttactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttga |
37939741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 37940410 - 37940145
Alignment:
| Q |
23 |
cagagacagtaaaagaagaagctgtggctacagaagttgaagctacagaaacagtaa---aagaacccgtggttactgaagttgatctgacagaatcagt |
119 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||| |||||||| |||||||||||| ||| |||||| |||| |||||||||||| || ||| |||| |
|
|
| T |
37940410 |
cagagatagtaaaagaagaacccgtggttactgaagttgaggctacagaaacactaaaagaagaacttgtggctactgaagttgaggctacggaaacagt |
37940311 |
T |
|
| Q |
120 |
aaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacagaaacggtaaaagaagaa |
219 |
Q |
| |
|
||||| |||||| | |||||||||| | ||||||||| | |||||| |||||||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
37940310 |
aaaagaagaacctgcagctactgaagttaaggttacagaaaccgtaaaagacgaacctgtggttactgaagttgatcctacagaaacggtaaaagaagaa |
37940211 |
T |
|
| Q |
220 |
cccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttgag |
285 |
Q |
| |
|
|| | |||||||||| ||| |||||||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
37940210 |
cctctagctactgaagctgaagctacagaaacagtaaaagaagaacccgtggctactgaagttgag |
37940145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 109 - 284
Target Start/End: Complemental strand, 37939826 - 37939654
Alignment:
| Q |
109 |
acagaatcagtaaaagtcaaacctgtggttactgaagttgatcctacagaaacggcaaaagaagaacctgtggctactgaagttcaagctacagaaacgg |
208 |
Q |
| |
|
|||||| | ||||||| | ||||| | ||||||||||||||||||||||| || | |||||||||| |||||||||| |||||| || |||| |||| | |
|
|
| T |
37939826 |
acagaaacggtaaaagacgaacctatagttactgaagttgatcctacagagacagtaaaagaagaagctgtggctacagaagttgaaattacaaaaacag |
37939727 |
T |
|
| Q |
209 |
taaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttga |
284 |
Q |
| |
|
||| |||||||| ||| |||||||||||| | |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
37939726 |
taa---aagaacccctggttactgaagttgatctgacagaatcagtaaaagtcaaacctgtggttactgaagttga |
37939654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 37940402 - 37940324
Alignment:
| Q |
208 |
gtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttgagg |
286 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||||| |
|
|
| T |
37940402 |
gtaaaagaagaacccgtggttactgaagttgaggctacagaaacactaaaagaagaacttgtggctactgaagttgagg |
37940324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 37940458 - 37940369
Alignment:
| Q |
197 |
ctacagaaacggtaaaagaagaacccgtggctactgaagttgagcctacagaaacagtaaaaggtgaacctgtggttactgaagttgagg |
286 |
Q |
| |
|
|||||||||| || |||||||||||| ||| ||| ||||||| | || |||| | |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
37940458 |
ctacagaaacagtgaaagaagaacccatggttaccgaagttgcgactgcagagatagtaaaagaagaacccgtggttactgaagttgagg |
37940369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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