View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12135_low_3 (Length: 387)
Name: NF12135_low_3
Description: NF12135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12135_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 181 - 373
Target Start/End: Original strand, 7350950 - 7351142
Alignment:
| Q |
181 |
atgttttttaagcgttttatggtgtattaatgctacactctaatatgttagcaggatgtcatacatttaggaaaatgtctgataaggaggttggatatga |
280 |
Q |
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| T |
7350950 |
atgttttttaagtgttttatggtgtattaatgctacaatctaatatgttagcaggatgtaatacatttaggaaaatgtttgataaggaggttggatatga |
7351049 |
T |
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| Q |
281 |
tttagtatagtgttacatcaagatgatcgatcagacattaaattagtatgaggtcgtggttgatcaaaagcatggtaagatatgtttcacaca |
373 |
Q |
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| T |
7351050 |
tttagtataccgttacatcaagatgatcaatcagacattaaattagtatgaggtcgtggttgaccaaaagcatggcaagatatgtttcacaca |
7351142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 7349584 - 7349737
Alignment:
| Q |
1 |
aggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgttaa |
100 |
Q |
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| T |
7349584 |
aggaaggtatgcaactgcattcaaaatctaattaacattttcatacatttttgagtaatattcaaattgtcaacgatgaagaggaagctaccttt----- |
7349678 |
T |
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| Q |
101 |
agttaaattgacattaaaattgaataagtattgttgcaaaactagaaaagatgttaaatg |
160 |
Q |
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| T |
7349679 |
-gttaaattgacattaaaattgaataagtattgatgcaaaactagaaaagatgttaaatg |
7349737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 24259039 - 24259190
Alignment:
| Q |
1 |
aggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgttaa |
100 |
Q |
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| T |
24259039 |
aggaaggtatgcaactgcattcaaaatctcattcacattttcatacattttttagtaatattccaattgtcaacgatgaagaggtagctaccttt----- |
24259133 |
T |
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| Q |
101 |
agttaaattgacattaaaattgaataagtattgttgcaaaactagaaaagatgttaaa |
158 |
Q |
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| T |
24259134 |
-gttaaattgacattaaaaatgaataagtattgatgcaaaattagaaaagatgttaaa |
24259190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 54933999 - 54933848
Alignment:
| Q |
1 |
aggaaggtatgtaactgcattcaaaatctaattaacatttttatacatttttgagtaatattcaaattgtcaacgattaagaggaagctacctttgttaa |
100 |
Q |
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| T |
54933999 |
aggaaggtatgcaactgcaatcaaaatctcattcacattttcatacatttttgagtaatattccaattgtcaacgatgaagaggtagctacctttgt--- |
54933903 |
T |
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| Q |
101 |
agttaaattgacattaaaattgaataagtattgttgcaaaactagaaaagatgttaaa |
158 |
Q |
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| T |
54933902 |
---taaattgacattaaaaatgaataagtattgatgcaaaattagaaaagatgttaaa |
54933848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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