View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12135_low_5 (Length: 231)
Name: NF12135_low_5
Description: NF12135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12135_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 26100931 - 26101112
Alignment:
| Q |
43 |
gcaagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcc |
142 |
Q |
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| T |
26100931 |
gcaagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcc |
26101030 |
T |
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| Q |
143 |
ttcgactctgctgtcgagggttgtgatggtgtcttccatactgcttcacctgttcgttttatcgtaaatgacccacaggttc |
224 |
Q |
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| T |
26101031 |
tttgactctgttgttgagggttgtgatggtgtctttcatactgcttcacctgttcgttttgtcgtaaatgacccacaggttc |
26101112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 25933383 - 25933593
Alignment:
| Q |
18 |
ggtttcccttatgaatgattggtgtgcaa----gcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactct |
113 |
Q |
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| T |
25933383 |
ggtttcccttatgaatgattggtgtgcaagcaagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactct |
25933482 |
T |
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| Q |
114 |
ttaaggcagatctcttggaagaaggttccttcgactctgctgtcgagggttgtgatggtgtcttccatactgcttcacctgttcgttttatcgtaaatga |
213 |
Q |
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| T |
25933483 |
ttaaggcagatctcttggaagaaggttcttttgactctgttgttgagggttgtgatggtgtctttcatactgcttcacctgttcgttttgtcgtaaatga |
25933582 |
T |
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| Q |
214 |
cccacaggttc |
224 |
Q |
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| T |
25933583 |
cccacaggttc |
25933593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 29548945 - 29549120
Alignment:
| Q |
49 |
aggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttccttcgac |
148 |
Q |
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| T |
29548945 |
aggtaattccaataaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgat |
29549044 |
T |
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| Q |
149 |
tctgctgtcgagggttgtgatggtgtcttccatactgcttcacctgttcgttttatcgtaaatgacccacaggttc |
224 |
Q |
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| T |
29549045 |
tctgttattcaaggatgccatggtgtctttcatactgcttcacccgttcattttgtcgtcaccgaccctcaggttc |
29549120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 29555154 - 29555299
Alignment:
| Q |
49 |
aggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttccttcgac |
148 |
Q |
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|||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| || ||| |
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| T |
29555154 |
aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttcatttgac |
29555253 |
T |
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| Q |
149 |
tctgctgtcgagggttgtgatggtgtcttccatactgcttcacctg |
194 |
Q |
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| T |
29555254 |
catgttattcaaggttgtcatggtgtttttcataccgcttcacctg |
29555299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 87805 - 87929
Alignment:
| Q |
62 |
aaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttccttcgactctgctgtcgagg |
161 |
Q |
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| T |
87805 |
aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgttcaag |
87904 |
T |
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| Q |
162 |
gttgtgatggtgtcttccatactgc |
186 |
Q |
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| T |
87905 |
gctgtcatggtgtctttcacactgc |
87929 |
T |
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