View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12136_high_5 (Length: 301)
Name: NF12136_high_5
Description: NF12136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12136_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 111 - 284
Target Start/End: Original strand, 7426831 - 7427004
Alignment:
| Q |
111 |
catgagagaattggcctaaatctcaaaagagaatattggcnnnnnnnattttcccaattgatctagtgaatggtgatttcctgcttgatgagtggatgac |
210 |
Q |
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| T |
7426831 |
catgagagaattggcctaaatctcaaaagagaatattggctttttttattttcccaattgatctagtgaatggtgatttcctgcttgatgagtggatgac |
7426930 |
T |
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| Q |
211 |
ttctctttaacaatactcatattcatacatgcagtttaaaaaacaatatttgtacttttattcattggatatct |
284 |
Q |
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| T |
7426931 |
ttctctttaacaatactcgtattcatacatgcagtttaaaaaacaatatttgtacttttattcattggatatct |
7427004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 7426735 - 7426781
Alignment:
| Q |
15 |
cagagagtatgaaaaagagttgtcacaaaataacggtacaaatatca |
61 |
Q |
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| T |
7426735 |
cagagagtatgaaaaagagttgtcacaaaataacggtacaactatca |
7426781 |
T |
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