View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12136_low_2 (Length: 408)
Name: NF12136_low_2
Description: NF12136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12136_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 186 - 392
Target Start/End: Complemental strand, 28841532 - 28841326
Alignment:
| Q |
186 |
gaaaacataccatgaagtaatgaaaacaagcttccacctagcaagtagtcataaacaagaagtttctcatctttggaatagtaataagctctaagtgtta |
285 |
Q |
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| T |
28841532 |
gaaaacataccatgaagtaatgaaaacaagcttccaccaagcatgtagtcgcaaacaagaagtttctcatctttggaatagtaataagctctaagtggta |
28841433 |
T |
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| Q |
286 |
tgacattaggatgtcttccaattcttccaacaacctccatctgttgctcaaactccttctttccaacgacaacttctctcaaccttttaaccacaactgt |
385 |
Q |
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| T |
28841432 |
ggacattaggatgtcttccaattcttccaacaacctccatctgctgctcaaactccttctttccgaccaaaacttctcttaaccttttaaccacaactgt |
28841333 |
T |
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| Q |
386 |
tattcct |
392 |
Q |
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|||||| |
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| T |
28841332 |
cattcct |
28841326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 2385977 - 2386017
Alignment:
| Q |
231 |
tagtcataaacaagaagtttctcatctttggaatagtaata |
271 |
Q |
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| T |
2385977 |
tagtcatacacaaccagtttctcatctttggaatagtaata |
2386017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 42816984 - 42816853
Alignment:
| Q |
245 |
aagtttctcatctttggaatagtaataagctctaagtgttatgacattaggatgtcttccaattcttccaacaacctccatctgttgctcaaactccttc |
344 |
Q |
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| T |
42816984 |
aagtttctcatctttggagtagtaataagctcgaagtggcataacatttggatggcgtccgattctcccaacaatatccaactgttgttcaaactccttc |
42816885 |
T |
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| Q |
345 |
tttccaacgacaacttctctcaaccttttaac |
376 |
Q |
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| T |
42816884 |
tttcctaccataacttccttcaaccttttaac |
42816853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 28223023 - 28223088
Alignment:
| Q |
320 |
ctccatctgttgctcaaactccttctttccaacgacaacttctctcaaccttttaaccacaactgt |
385 |
Q |
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| T |
28223023 |
ctccatctgctgatcaaactccttttttccaaccacaacttctttcaaccttttcaccacaactgt |
28223088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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