View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12136_low_4 (Length: 360)
Name: NF12136_low_4
Description: NF12136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12136_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 40464058 - 40464400
Alignment:
| Q |
1 |
ataaataaatatatcattttggtgtcctggatgacatgttgagatatctctttcaacttaaatagatgttttggattcgaatccgcggttataaaaatat |
100 |
Q |
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| T |
40464058 |
ataaataaatatatcattttggtgacctggatgacatgttgagatatctctttcaacttaattagatgttttggattcgaatccacggttataaaaatat |
40464157 |
T |
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| Q |
101 |
aacggtgtttgatcttttaataaagagctgtgtgtagagatatccaattnnnnnnntatcaatttttgtagacgtcaaccacacatatctgctgtaaaat |
200 |
Q |
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| T |
40464158 |
aacggtgtttaatcttttaataaagagttgtgcgtagagatatccaattaaaaaaatatcaatttttgtagaggtcaaccacacat--ctgctgtaaaaa |
40464255 |
T |
|
| Q |
201 |
aaa---gcacacacatgtatctttttaaaattttaaaatatataacatgattattgagattaacatttataaaatttcaaataaaatttaataatatttg |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464256 |
aaaaaagcacacacatgtatctttttaaaattttaaaatatataacattattattgagattaacatttataaaatttcaaataaaatttaataatatttg |
40464355 |
T |
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| Q |
298 |
agaaaaccacaaaattccgcgtcgtctaatttcatggggtacagt |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464356 |
agaaaaccacaaaattccgcgtcgtctaatttcatggggtacagt |
40464400 |
T |
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