View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12136_low_6 (Length: 229)

Name: NF12136_low_6
Description: NF12136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12136_low_6
NF12136_low_6
[»] scaffold0012 (2 HSPs)
scaffold0012 (46-229)||(121979-122162)
scaffold0012 (7-53)||(122240-122286)
[»] scaffold0006 (5 HSPs)
scaffold0006 (46-229)||(211944-212127)
scaffold0006 (96-225)||(4909-5038)
scaffold0006 (135-224)||(174543-174632)
scaffold0006 (135-224)||(189951-190040)
scaffold0006 (7-47)||(212211-212251)
[»] chr1 (9 HSPs)
chr1 (46-229)||(20492441-20492623)
chr1 (96-225)||(13597624-13597753)
chr1 (135-224)||(13676961-13677050)
chr1 (152-224)||(13595800-13595872)
chr1 (7-48)||(20492262-20492303)
chr1 (161-219)||(13552070-13552128)
chr1 (9-47)||(13690430-13690468)
chr1 (135-224)||(20377254-20377342)
chr1 (135-224)||(20511239-20511327)
[»] chr6 (3 HSPs)
chr6 (96-229)||(21818306-21818438)
chr6 (166-218)||(21816461-21816513)
chr6 (9-52)||(21818549-21818592)
[»] chr2 (1 HSPs)
chr2 (135-218)||(38053232-38053315)
[»] chr8 (2 HSPs)
chr8 (161-219)||(20769652-20769710)
chr8 (161-219)||(20779446-20779504)
[»] scaffold0460 (2 HSPs)
scaffold0460 (135-224)||(6760-6848)
scaffold0460 (135-224)||(11325-11413)
[»] scaffold0069 (1 HSPs)
scaffold0069 (135-224)||(47556-47644)


Alignment Details
Target: scaffold0012 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 122162 - 121979
Alignment:
Q  46 ggaacataaagtagaatgaacaaatctcacctagaaactcctaaattatgctcaaatctaccataccacaattcttttcatagggaaaataaatgctcta 145  Q
    |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  122162 ggaaaataaagtggaatgaacaaatctcacctggaaactcctaaattatgctcaagtcgaccataccacaattcttttcatagggaaaataaatgctcta 122063  T
Q  146 aaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataatccga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  122062 aaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtagtagtaaaatatagttcataatccga 121979  T

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Target: scaffold0012; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 122286 - 122240
Alignment:
Q  7 atatgatggtcttatcattcaacgtattaattagaatgtggaacata 53  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  122286 atatgatggtcttatcattcagcgtattaattagaatgtggaacata 122240  T

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Target: scaffold0006 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 212127 - 211944
Alignment:
Q  46 ggaacataaagtagaatgaacaaatctcacctagaaactcctaaattatgctcaaatctaccataccacaattcttttcatagggaaaataaatgctcta 145  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||||||||||| || |||||||||||  | ||||||||||||||||||||||||||    
T  212127 ggaaaataaagtagaatgaacaaatctcacctgaaaactcctaaattatgctcaagtcgaccataccacatattttttcatagggaaaataaatgctcta 212028  T
Q  146 aaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataatccga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  212027 aaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtagtagtaaaatatagttcataatccga 211944  T

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Target: scaffold0006; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 5038 - 4909
Alignment:
Q  96 ctcaaatctaccataccacaattcttttcatagggaaaataaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaa 195  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5038 ctcaagtcgaccataccacaattcttttcatagggaaaataaatgctctaaaccatcaaatccatcctgcaaaaacaattgtattgcgtgttaattcaaa 4939  T
Q  196 caaaagtggtagtaaaatatagttcataat 225  Q
    ||||||| |||||||||| |||||||||||    
T  4938 caaaagtagtagtaaaatgtagttcataat 4909  T

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Target: scaffold0006; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 174632 - 174543
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||| | |||||||  ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  174632 taaatgcttgaaactaccaaatcccacctgcaaaaacaattgtatcgcgtgttaattcaaacaaatgtagtagtaaaatatagttcataa 174543  T

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Target: scaffold0006; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 190040 - 189951
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||| | |||||||  ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  190040 taaatgcttgaaactaccaaatcccacctgcaaaaacaattgtatcgcgtgttaattcaaacaaatgtagtagtaaaatatagttcataa 189951  T

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Target: scaffold0006; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 212251 - 212211
Alignment:
Q  7 atatgatggtcttatcattcaacgtattaattagaatgtgg 47  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  212251 atatgatggttttatcattcaacgtattaattagaatgtgg 212211  T

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Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 20492441 - 20492623
Alignment:
Q  46 ggaacataaagtagaatgaacaaatctcacctagaaactcctaaattatgctcaaatctaccataccacaattcttttcatagggaaaataaatgctcta 145  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||  | ||||||||||||||||||||||||||    
T  20492441 ggaaaataaagtagaatgaacaaatctcacctggaaactcctaaattatgctcaagtcgaccataccacatattttttcatagggaaaataaatgctcta 20492540  T
Q  146 aaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataatccga 229  Q
    ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  20492541 aaccatcaaatcc-tcctgcaaaaacaatcgtattgagtgttaattcaaacaaaagtagtagtaaaatatagttcataatccga 20492623  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 13597753 - 13597624
Alignment:
Q  96 ctcaaatctaccataccacaattcttttcatagggaaaataaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaa 195  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13597753 ctcaagtcgaccataccacaattcttttcatagggaaaataaatgctctaaaccatcaaatccatcctgcaaaaacaattgtattgcgtgttaattcaaa 13597654  T
Q  196 caaaagtggtagtaaaatatagttcataat 225  Q
    ||||||| |||||||||| |||||||||||    
T  13597653 caaaagtagtagtaaaatgtagttcataat 13597624  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 13677050 - 13676961
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||| | |||||||  ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  13677050 taaatgcttgaaactaccaaatcccacctgcaaaaacaattgtatcgcgtgttaattcaaacaaatgtagtagtaaaatatagttcataa 13676961  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 13595872 - 13595800
Alignment:
Q  152 caaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  13595872 caaatcccacctgcaaaaacaattgtatcgcgtgttaattcaaacaaatgtagtagtaaaatatagttcataa 13595800  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 20492262 - 20492303
Alignment:
Q  7 atatgatggtcttatcattcaacgtattaattagaatgtgga 48  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20492262 atatgatggtcttatcattcaacgtattaattagaatgtgga 20492303  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 13552128 - 13552070
Alignment:
Q  161 cctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagtt 219  Q
    |||| |||||||||||||||||| |||| ||||||||||| | ||| ||||||||||||    
T  13552128 cctgtaaaaacaattgtattgcgagttagttcaaacaaaactagtaataaaatatagtt 13552070  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 13690468 - 13690430
Alignment:
Q  9 atgatggtcttatcattcaacgtattaattagaatgtgg 47  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  13690468 atgatggtctcatcattcaacatattaattagaatgtgg 13690430  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 20377342 - 20377254
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||||| |||||||  ||||  ||||||||||||||| | |||| ||| |||||| || | |||||||||||||||||||    
T  20377342 taaatgcttgaaaccaccaaatcccacctgtgaaaacaattgtattgtgagttagttc-aacaaacgtagcagtaaaatatagttcataa 20377254  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 20511239 - 20511327
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||||| |||||||  ||||  ||||||||||||||| | |||| ||| |||||| || | |||||||||||||||||||    
T  20511239 taaatgcttgaaaccaccaaatcccacctgtgaaaacaattgtattgtgagttagttc-aacaaacgtagcagtaaaatatagttcataa 20511327  T

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Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 21818438 - 21818306
Alignment:
Q  96 ctcaaatctaccataccacaattcttttcatagggaaaataaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaa 195  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  21818438 ctcaagtcgaccataccacaattcttttcataggaaaaataaatgctctaaaccatcaaatcct-cctgcaaaaacaatcgtattgagtgttaattcaaa 21818340  T
Q  196 caaaagtggtagtaaaatatagttcataatccga 229  Q
    ||||||| ||||||||||||||||||||||||||    
T  21818339 caaaagtagtagtaaaatatagttcataatccga 21818306  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 21816513 - 21816461
Alignment:
Q  166 aaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagt 218  Q
    |||||||||||||||  | |||| ||||||||||||| |||||||||||||||    
T  21816513 aaaaacaattgtattatgagttagttcaaacaaaagtagtagtaaaatatagt 21816461  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 21818592 - 21818549
Alignment:
Q  9 atgatggtcttatcattcaacgtattaattagaatgtggaacat 52  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||    
T  21818592 atgatggtctcatcattcaacatattaattagaatgtgggacat 21818549  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 38053232 - 38053315
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagt 218  Q
    ||||||||  |||| | |||||||  |||||||||||||||||||| | ||||| |||| |||||||| |||||||||||||||    
T  38053232 taaatgcttgaaactaccaaatcccacctgcaaaaacaattgtatttcatgttagttcacacaaaagtagtagtaaaatatagt 38053315  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 20769652 - 20769710
Alignment:
Q  161 cctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagtt 219  Q
    |||| |||||||||||||||||| |||| |||||||| |||| ||| ||||||||||||    
T  20769652 cctgtaaaaacaattgtattgcgagttagttcaaacagaagtagtaataaaatatagtt 20769710  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 20779446 - 20779504
Alignment:
Q  161 cctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagtt 219  Q
    |||| |||||||||||||||||| |||| |||||||| |||| ||| ||||||||||||    
T  20779446 cctgtaaaaacaattgtattgcgagttagttcaaacagaagtagtaataaaatatagtt 20779504  T

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Target: scaffold0460 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 6848 - 6760
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||| | |||||||  |||| |||||||||||||||| | |||| ||| |||||| || | |||||||||||||||||||    
T  6848 taaatgcttgaaactaccaaatcccacctgtaaaaacaattgtattgtgagttagttc-aacaaacgtagcagtaaaatatagttcataa 6760  T

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Target: scaffold0460; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 11413 - 11325
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||| | |||||||  |||| |||||||||||||||| | |||| ||| |||||| || | |||||||||||||||||||    
T  11413 taaatgcttgaaactaccaaatcccacctgtaaaaacaattgtattgtgagttagttc-aacaaacgtagcagtaaaatatagttcataa 11325  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 47644 - 47556
Alignment:
Q  135 taaatgctctaaaccatcaaatccttcctgcaaaaacaattgtattgcgtgttaattcaaacaaaagtggtagtaaaatatagttcataa 224  Q
    ||||||||  |||||| |||||||  ||||  ||||||||||||||| | |||| ||| |||||| || | |||||||||||||||||||    
T  47644 taaatgcttgaaaccaccaaatcccacctgtgaaaacaattgtattgtgagttagttc-aacaaacgtagcagtaaaatatagttcataa 47556  T

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