View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12136_low_8 (Length: 228)
Name: NF12136_low_8
Description: NF12136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12136_low_8 |
 | |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 13597293 - 13597484
Alignment:
| Q |
20 |
aagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatttcgaa |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13597293 |
aagaatctgtttgatgacaaggtatgttttatttttctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcattttgag |
13597392 |
T |
|
| Q |
120 |
ggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaatgtaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13597393 |
ggtcgaaaaaatgtagtgtaatacacaaaaatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaatgtaa |
13597484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 21817979 - 21818170
Alignment:
| Q |
20 |
aagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatttcgaa |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21817979 |
aagaatctgtttgatgataaggtatgttttatttttctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcattttgaa |
21818078 |
T |
|
| Q |
120 |
ggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaatgtaa |
211 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21818079 |
ggtcgaaaaaatgtagtgtaatagactaaaatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaatgtaa |
21818170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 4578 - 4769
Alignment:
| Q |
20 |
aagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatttcgaa |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4578 |
aagaatctgtttgatgacaaggtatgttttatttttctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcattttgat |
4677 |
T |
|
| Q |
120 |
ggtcgaaaaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaatgtaa |
211 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4678 |
ggtcgaaaaaatgtagtgtaatatactaaaatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaatgtaa |
4769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 211636 - 211815
Alignment:
| Q |
27 |
tgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatttcgaaggtcgaa |
126 |
Q |
| |
|
||||||| || |||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
211636 |
tgtttgacgataaggtatgttttactttcgtccatcactttatttgctttcggttagtttaagactatctagctagctcatgatcattttgaaggtcgaa |
211735 |
T |
|
| Q |
127 |
aaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaa |
206 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
211736 |
aaaatgtagtgtaatagactaaaatattatacataggaccttatttaagtgcttatggcataaggctttatcacatgaaa |
211815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 121671 - 121850
Alignment:
| Q |
27 |
tgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatttcgaaggtcgaa |
126 |
Q |
| |
|
||||||| || |||||||||||||| || |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
121671 |
tgtttgacgataaggtatgttttactttcgtccatcactttatttgctttcggttagtttaagactatctagctagctcatgatcattttgaaggtcgaa |
121770 |
T |
|
| Q |
127 |
aaaatgtagtgtaatacacaaatatattatacataggaccttatttaagtgcttatggcataagggtttatcacatgaaa |
206 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
121771 |
aaaatgtagtgtaatagactaaaatattatacataggaccttatttaagtgcttatggcataaggctttatcacatgaaa |
121850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 38051507 - 38051394
Alignment:
| Q |
15 |
ctgtgaagaatctgtttgatgagaaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatt |
114 |
Q |
| |
|
|||| ||||| || |||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
|
|
| T |
38051507 |
ctgtaaagaaactatttgatgacaaggtatgttttactttcatccaccaatttatttgctttgggatagtttaagactatctatctagatcatgatcatt |
38051408 |
T |
|
| Q |
115 |
tcgaaggtcgaaaa |
128 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
38051407 |
ttgaaggtggaaaa |
38051394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 30701111 - 30701053
Alignment:
| Q |
57 |
tccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcattt |
115 |
Q |
| |
|
|||| |||||||||| |||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30701111 |
tccatcaatttatttactttggtttagtttaagactatctatctagatcatgatcattt |
30701053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 20838447 - 20838316
Alignment:
| Q |
38 |
aaggtatgttttacattgctccaccaatttatttgctttcggttagtttaagactatctagctagatcatgatcatttcgaaggtcgaaaaaatgtagtg |
137 |
Q |
| |
|
|||||| ||||||| || ||||||| |||||||| |||| | |||||||||||||| |||||||| ||||| ||||| | |||||| |||| ||||||| |
|
|
| T |
20838447 |
aaggtaagttttactttcctccaccgatttattttcttttagatagtttaagactatatagctagaccatgaccattttggaggtcg-aaaagtgtagtg |
20838349 |
T |
|
| Q |
138 |
taatacacaaatatattatacataggaccttat |
170 |
Q |
| |
|
||||| || || ||||||||| || |||||||| |
|
|
| T |
20838348 |
taatagactaaaatattatacgtaagaccttat |
20838316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University