View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12137_high_1 (Length: 675)

Name: NF12137_high_1
Description: NF12137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12137_high_1
NF12137_high_1
[»] chr2 (9 HSPs)
chr2 (249-664)||(132467-132882)
chr2 (10-136)||(133036-133162)
chr2 (248-367)||(45336357-45336476)
chr2 (248-367)||(45338669-45338788)
chr2 (248-397)||(1453994-1454144)
chr2 (248-367)||(17648969-17649088)
chr2 (248-348)||(14662448-14662548)
chr2 (359-499)||(17648814-17648954)
chr2 (350-453)||(14662319-14662422)
[»] chr8 (2 HSPs)
chr8 (248-367)||(44734250-44734369)
chr8 (248-364)||(44731942-44732058)
[»] chr4 (3 HSPs)
chr4 (248-367)||(22804709-22804828)
chr4 (359-453)||(7231025-7231117)
chr4 (268-367)||(7230912-7231010)
[»] chr3 (9 HSPs)
chr3 (248-367)||(48023927-48024047)
chr3 (248-367)||(28784611-28784730)
chr3 (268-367)||(5354559-5354658)
chr3 (268-367)||(48707642-48707741)
chr3 (350-499)||(48027344-48027493)
chr3 (379-499)||(48025193-48025313)
chr3 (279-353)||(5913484-5913558)
chr3 (379-499)||(48024082-48024202)
chr3 (379-499)||(48024633-48024753)
[»] chr5 (2 HSPs)
chr5 (248-367)||(32798104-32798223)
chr5 (248-367)||(32800416-32800535)
[»] chr1 (3 HSPs)
chr1 (248-367)||(1550254-1550373)
chr1 (248-367)||(9535353-9535472)
chr1 (72-131)||(35046733-35046792)
[»] chr7 (4 HSPs)
chr7 (248-367)||(13108750-13108870)
chr7 (255-367)||(13111050-13111163)
chr7 (350-499)||(13111169-13111318)
chr7 (360-453)||(13108886-13108979)
[»] chr6 (1 HSPs)
chr6 (255-367)||(6723561-6723675)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 249 - 664
Target Start/End: Complemental strand, 132882 - 132467
Alignment:
Q  249 actttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactct 348  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  132882 actttaatacatcaaactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaatcaaatctgcaataaatctactct 132783  T
Q  349 aaacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttac 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132782 aaacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttac 132683  T
Q  449 agaaataagcagcaaaaaataattaataaaacagaaaaatctcaatctccattccaacaatctgaaacaaagaattagtaacaacatatcaaatatattc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132682 agaaataagcagcaaaaaataattaataaaacagaaaaatctcaatctccattccaacaatctgaaacaaagaattagtaacaacatatcaaatatattc 132583  T
Q  549 aactaaaaactttaatttagtattatgatccgactctccttgccacacctggttttgcaagtgaaaattacaatgtcggccaaaatgttaccaattagaa 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132582 aactaaaaactttaatttagtattatgatccgactctccttgccacacctggttttgcaagtgaaaattacaatgtcggccaaaatgttaccaattagaa 132483  T
Q  649 aaagacatcccacagg 664  Q
    ||||||||||||||||    
T  132482 aaagacatcccacagg 132467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 133162 - 133036
Alignment:
Q  10 aacctgtgtacttttgatcctgctttatgaactgtcagtggatgatgtatttctgatttaccaggatccagtgcaggctgtgatatctctagcccttctt 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  133162 aacctgtgtacttttgatcctgctttatgaactgtcaatggatgatgtatttctgatttaccaggatccagtgcaggctgtgatatctctagcccttctt 133063  T
Q  110 ctttaacaatagataaatacctaacca 136  Q
    |||||||||||||||||||||||||||    
T  133062 ctttaacaatagataaatacctaacca 133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 45336476 - 45336357
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  45336476 tactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 45336377  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  45336376 taaacactagtcatcattac 45336357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 45338788 - 45338669
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  45338788 tactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 45338689  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  45338688 taaacactagtcatcattac 45338669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 248 - 397
Target Start/End: Complemental strand, 1454144 - 1453994
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaa-tctgcaataaatctact 346  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||  | | ||||| | ||||||||||| |||||| |||||||| |    
T  1454144 tactttgatacattaaactgaagcatacactacaaatatatagagccaagccataagctttcttgtaaaattgaaaataaaactctgcagtaaatctatt 1454045  T
Q  347 ctaaacactagccatcattacttagtgactactttacttaataaataagca 397  Q
     |||||||||| ||||||||  ||| |||| ||||||||| |||| |||||    
T  1454044 ttaaacactagtcatcattatctagggacttctttacttactaaacaagca 1453994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 17649088 - 17648969
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||   ||||||||||||  |||||||||||||| |||||||||||  ||| ||||||| |||| ||||||| |||| |||||||||||    
T  17649088 tactttgatacatttagctgaagcatacataacaaatatatagagccaagccataagcttgcttgtaagattgaacataaaatatgcactaaatctactc 17648989  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  17648988 taaacactagtcatcattac 17648969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 248 - 348
Target Start/End: Complemental strand, 14662548 - 14662448
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||   ||| ||||| |||||| |||| |||||||  ||||||||||    
T  14662548 tactttgatacattaaactgaagcatacactacaaatatatagagccaagccataaacttgcttgtaaaactgaacataagatctgcacgaaatctactc 14662449  T
Q  348 t 348  Q
    |    
T  14662448 t 14662448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 499
Target Start/End: Complemental strand, 17648954 - 17648814
Alignment:
Q  359 catcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaata-ag 457  Q
    ||||||||| ||  ||||| ||||| || | |||||||| | | |||||||||||| | |||||||  |||||||||| |||||| | ||||||| | ||    
T  17648954 catcattacctaaggactattttacatacttaataagcaacaatctaattatgacattaacttaaa--caagcaacaagctaattatgacagaaaaacag 17648857  T
Q  458 cagcaaaaaa-taattaataaaacagaaaaatctcaatctcca 499  Q
    ||||| | || ||||||| ||||||||||||| ||||||||||    
T  17648856 cagcacacaagtaattaacaaaacagaaaaatatcaatctcca 17648814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 453
Target Start/End: Complemental strand, 14662422 - 14662319
Alignment:
Q  350 aacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttaca 449  Q
    |||| ||| ||||||||| ||| ||||  |||||||| |||||||||| | | ||||||||||||||||   | |||||||||||| | ||||| | |||    
T  14662422 aacaatagacatcattacctagggactgttttacttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgaca 14662323  T
Q  450 gaaa 453  Q
    ||||    
T  14662322 gaaa 14662319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 44734369 - 44734250
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  44734369 tactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 44734270  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  44734269 taaacactagtcatcattac 44734250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 248 - 364
Target Start/End: Complemental strand, 44732058 - 44731942
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  44732058 tactttgatacattaaacttaagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 44731959  T
Q  348 taaacactagccatcat 364  Q
    |||||||||| ||||||    
T  44731958 taaacactagtcatcat 44731942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 22804828 - 22804709
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| || |||||||||||||||||||||| |||||||||||||||  ||||||||| || |||||||||||| |||||||||||    
T  22804828 tactttgatacattaaacttaaacatacactacaaatatatagagccaagccataagtctgtttgtaagactaaacataaaatctgcattaaatctactc 22804729  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  22804728 taaacactagtcatcattac 22804709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 7231025 - 7231117
Alignment:
Q  359 catcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaa 453  Q
    ||||||||| ||  |||||||||||||| |||||||||||| | |||||||||||||| ||||  |||||||||||||||||||| | |||||||    
T  7231025 catcattacctacggactactttacttactaaataagcagcaatctaattatgacactaactt--aaacaagcaacaatctaattatgacagaaa 7231117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 7230912 - 7231010
Alignment:
Q  268 aagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactctaaacactagccatcattac 367  Q
    |||||||||  ||||| |||||||| ||||||||||   | | || |||| |||| |||||||||||| ||||||| ||||||||||||| |||||||||    
T  7230912 aagcatacataacaaa-atatagagccaagccataaactttcttggaagattgaacataaaatctgcactaaatctgctctaaacactagtcatcattac 7231010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 48023927 - 48024047
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| |||||||||||| |||||||||||    
T  48023927 tacttttatacattaaactgaagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactgaacataaaatctgcactaaatctactc 48024026  T
Q  348 -taaacactagccatcattac 367  Q
     ||| |||||| |||||||||    
T  48024027 ttaagcactagtcatcattac 48024047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 28784730 - 28784611
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||  |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  28784730 tactttgatacattaaacttaagcatacactacaaatatatagaatcaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 28784631  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  28784630 taaacactagtcatcattac 28784611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 5354559 - 5354658
Alignment:
Q  268 aagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactctaaacactagccatcattac 367  Q
    ||||||||||||||||||||||||| |||||||||||  | | ||||||||| || |||||||||||| ||||||||||||||||||||| ||| |||||    
T  5354559 aagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattac 5354658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 48707642 - 48707741
Alignment:
Q  268 aagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactctaaacactagccatcattac 367  Q
    ||||||||||||||||||||||||| |||||||||||  ||| ||||||||| || ||||||||| || |||||||||| |||||||||| |||||||||    
T  48707642 aagcatacactacaaatatatagagtcaagccataagcttgcttgtaagactaaacataaaatctacactaaatctactttaaacactagtcatcattac 48707741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 499
Target Start/End: Original strand, 48027344 - 48027493
Alignment:
Q  350 aacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttaca 449  Q
    |||| ||| ||||||||| ||| ||||  |||||||| |||||||||| | | ||||||||||||||||   | |||||||||||| |  |||| |  ||    
T  48027344 aacaatagacatcattacctagggactgttttacttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaattatggca 48027443  T
Q  450 gaaataagcagcaaaaaataattaataaaacagaaaaatctcaatctcca 499  Q
    ||||   |||| ||||||||||||| ||||||||||||| ||||||||||    
T  48027444 gaaaacggcagtaaaaaataattaacaaaacagaaaaatatcaatctcca 48027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 379 - 499
Target Start/End: Original strand, 48025193 - 48025313
Alignment:
Q  379 tttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaa 478  Q
    |||||||| |||||||||| | | |||||||||||| |||   | |||||||||||| | ||||| | |||||||  ||||| | ||||||||||| |||    
T  48025193 tttacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaa 48025292  T
Q  479 acagaaaaatctcaatctcca 499  Q
    |||||||||| ||||||||||    
T  48025293 acagaaaaatatcaatctcca 48025313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 5913558 - 5913484
Alignment:
Q  279 acaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactctaaaca 353  Q
    |||||||||||||| ||| |||||||  ||| ||||||| |||| |||||||||||| |||||||||||||||||    
T  5913558 acaaatatatagagtcaaaccataagcttgcttgtaagattgaacataaaatctgcattaaatctactctaaaca 5913484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 379 - 499
Target Start/End: Original strand, 48024082 - 48024202
Alignment:
Q  379 tttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaa 478  Q
    |||||||| |||||||||| | | ||||||||||||||||   | ||||||| |||| | ||||| | |||||||  ||||| | ||||||||||| |||    
T  48024082 tttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaacaaa 48024181  T
Q  479 acagaaaaatctcaatctcca 499  Q
    | |||||||| ||||||||||    
T  48024182 agagaaaaatatcaatctcca 48024202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 379 - 499
Target Start/End: Original strand, 48024633 - 48024753
Alignment:
Q  379 tttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaa 478  Q
    |||||||| |||||||||| | | ||||||||||||||||   | ||||| |||||| | ||||| | |||||||  ||||| | ||||||||||| |||    
T  48024633 tttacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaacaaa 48024732  T
Q  479 acagaaaaatctcaatctcca 499  Q
    ||| |||||| ||||||||||    
T  48024733 acataaaaatatcaatctcca 48024753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 32798223 - 32798104
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  32798223 tactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 32798124  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  32798123 taaacactagtcatcattac 32798104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 32800535 - 32800416
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  32800535 tactttgatacattaaacttaagcatacaatacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 32800436  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  32800435 taaacactagtcatcattac 32800416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 1550373 - 1550254
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  1550373 tactttgatacattaaacttaagcatacattacaaatatatagagccaagccataagcttgcttgtaagactaaacataaaatctgcactaaatctactc 1550274  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  1550273 taaacactagtcatcattac 1550254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 9535472 - 9535353
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||| || |||||||||||||||||||||| ||||||||||   ||| ||||||||| || ||||||||| || |||||||||||    
T  9535472 tactttgatacattaaacttaaacatacactacaaatatatagagtcaagccataaacttgcttgtaagactaaacataaaatctacactaaatctactc 9535373  T
Q  348 taaacactagccatcattac 367  Q
    |||||||||| |||||||||    
T  9535372 taaacactagtcatcattac 9535353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 35046733 - 35046792
Alignment:
Q  72 aggatccagtgcaggctgtgatatctctagcccttcttctttaacaatagataaatacct 131  Q
    |||||| ||||| || ||||||||||| |||||||||||||| |||||||| | ||||||    
T  35046733 aggatcaagtgctggttgtgatatctcaagcccttcttctttgacaatagaaacatacct 35046792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 13108750 - 13108870
Alignment:
Q  248 tactttaatacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc 347  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||| ||||||| ||   |||||||||||    
T  13108750 tactttgatacattaaactgaagcatacactacaaatatatggagtcaagccataagtttgcttgtaagactgaatataaaatatgttctaaatctactc 13108849  T
Q  348 -taaacactagccatcattac 367  Q
     ||| |||||| |||||||||    
T  13108850 ttaagcactagtcatcattac 13108870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 255 - 367
Target Start/End: Original strand, 13111050 - 13111163
Alignment:
Q  255 atacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaataaaatctgcaataaatctactc-taaaca 353  Q
    |||||||| ||||||||||| | ||||||||||| ||| |||||||||||  ||| ||||||| |||  ||||||| |||| ||||||||||| ||| ||    
T  13111050 atacattaaactgaagcataaaatacaaatatattgagccaagccataagcttgcttgtaagagtgagcataaaatttgcactaaatctactcttaagca 13111149  T
Q  354 ctagccatcattac 367  Q
    |||| |||||||||    
T  13111150 ctagtcatcattac 13111163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 499
Target Start/End: Original strand, 13111169 - 13111318
Alignment:
Q  350 aacactagccatcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttaca 449  Q
    |||| ||| ||| ||||| ||| ||||| |||||||| |||||||||| | | ||||||||| |||||    | |||||||||||| | ||||| | |||    
T  13111169 aacaatagacattattacctagggactattttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgaca 13111268  T
Q  450 gaaataagcagcaaaaaataattaataaaacagaaaaatctcaatctcca 499  Q
    ||||  ||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  13111269 gaaaacagcagtaaaaagtaattaacaaaacagaaaaatatcaatctcca 13111318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 453
Target Start/End: Original strand, 13108886 - 13108979
Alignment:
Q  360 atcattacttagtgactactttacttaataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaa 453  Q
    |||||||| ||| ||||  |||||||| |||||||||| | | ||||||||||||||||   | |||||||||||| | ||||| | |||||||    
T  13108886 atcattacctagggactgttttacttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaa 13108979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 6723675 - 6723561
Alignment:
Q  255 atacattatactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactga--aaataaaatctgcaataaatctactctaaac 352  Q
    |||||||| ||| || ||||||||| |||||||||||| |||| ||||||| ||  ||||||||| |  | ||||||| || | ||||||||||||||||    
T  6723675 atacattaaactaaatcatacactataaatatatagagccaagtcataagtttgtttgtaagactcaacatataaaatttgtattaaatctactctaaac 6723576  T
Q  353 actagccatcattac 367  Q
    || || |||||||||    
T  6723575 acgagtcatcattac 6723561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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