View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12137_low_3 (Length: 369)
Name: NF12137_low_3
Description: NF12137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12137_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 8336496 - 8336831
Alignment:
| Q |
17 |
aaaaaggtagttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcagcagaacaatgaccggaccagcctct |
116 |
Q |
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| T |
8336496 |
aaaaagatagttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcagcagaacaatgactggaccagcctct |
8336595 |
T |
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| Q |
117 |
ttcctatcacttttatattgaacaaacttcgcagcatactcctcccacatagtacagttcagaacaatatcactaagaatcataacacgaaaggaattta |
216 |
Q |
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| T |
8336596 |
ttcctatcactgttatattgaacaaactttgcagcatactcctcccacagagtacagttcagaacaatatcactaagaatcataacacgaaaggaattta |
8336695 |
T |
|
| Q |
217 |
agttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaacttatatctttcatagtgaaattga |
316 |
Q |
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| T |
8336696 |
agttggttgaaaactgtaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaccttatatctttcatagtgaaattga |
8336795 |
T |
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| Q |
317 |
cttgaagctttttcccttcatttagttgacagtaac |
352 |
Q |
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| T |
8336796 |
cttgaagctttttcccttcatttagttgacagtaac |
8336831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 27 - 352
Target Start/End: Original strand, 10233622 - 10233947
Alignment:
| Q |
27 |
ttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcagcagaacaatgaccggaccagcctctttcctatcac |
126 |
Q |
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| T |
10233622 |
ttaaagaaacacgaaaaatccagtaaactattgaaaccttcttccttgattttgcaatacttcagtagaacaatgactagaccagcctctttcctatcac |
10233721 |
T |
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| Q |
127 |
ttttatattgaacaaacttcgcagcatactcctcccacatagtacagttcagaacaatatcactaagaatcataacacgaaaggaatttaagttggttga |
226 |
Q |
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| T |
10233722 |
tgttatattgaacaaacttcggagcatactcctcccacagagtacagttcagaacaatatcacaaagaatcataacacgaaaggaatttaagttggttga |
10233821 |
T |
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| Q |
227 |
aaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaacttatatctttcatagtgaaattgacttgaagctt |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10233822 |
aaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaccttatatctttcatagtgaaattgacttgaagctt |
10233921 |
T |
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| Q |
327 |
tttcccttcatttagttgacagtaac |
352 |
Q |
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| T |
10233922 |
tttcccttcatttagttgacagtaac |
10233947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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